View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9081_low_12 (Length: 485)

Name: NF9081_low_12
Description: NF9081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9081_low_12
NF9081_low_12
[»] chr8 (6 HSPs)
chr8 (1-466)||(5368769-5369239)
chr8 (54-345)||(10188092-10188388)
chr8 (54-345)||(4140007-4140302)
chr8 (85-345)||(917113-917378)
chr8 (116-292)||(28844850-28845028)
chr8 (286-345)||(28844596-28844657)
[»] chr5 (3 HSPs)
chr5 (19-345)||(37300013-37300342)
chr5 (116-292)||(36993043-36993221)
chr5 (286-345)||(36992729-36992790)
[»] chr4 (9 HSPs)
chr4 (116-345)||(53828867-53829100)
chr4 (54-345)||(21804614-21804909)
chr4 (54-345)||(21630889-21631184)
chr4 (19-334)||(34735602-34735920)
chr4 (116-292)||(2503038-2503216)
chr4 (116-292)||(46094300-46094478)
chr4 (59-140)||(20037893-20037974)
chr4 (286-345)||(2503407-2503468)
chr4 (286-345)||(46093986-46094047)
[»] chr3 (4 HSPs)
chr3 (19-345)||(48268006-48268329)
chr3 (116-345)||(35872103-35872339)
chr3 (116-292)||(52351654-52351832)
chr3 (286-345)||(52351401-52351462)
[»] chr1 (6 HSPs)
chr1 (19-345)||(22910739-22911071)
chr1 (19-278)||(39625267-39625529)
chr1 (116-292)||(13788157-13788335)
chr1 (116-292)||(25805807-25805985)
chr1 (286-345)||(13787904-13787965)
chr1 (286-345)||(25806177-25806238)
[»] chr7 (8 HSPs)
chr7 (116-345)||(47231980-47232214)
chr7 (116-292)||(5766457-5766635)
chr7 (116-292)||(25417611-25417789)
chr7 (116-292)||(39065202-39065380)
chr7 (166-351)||(5433047-5433236)
chr7 (286-345)||(5766893-5766954)
chr7 (286-345)||(25417981-25418042)
chr7 (286-345)||(39065510-39065571)
[»] chr2 (6 HSPs)
chr2 (85-345)||(29457077-29457339)
chr2 (116-292)||(7572127-7572305)
chr2 (116-292)||(16666722-16666900)
chr2 (85-345)||(43565868-43566134)
chr2 (286-345)||(7572497-7572558)
chr2 (286-345)||(16667092-16667153)
[»] chr6 (3 HSPs)
chr6 (19-333)||(18884319-18884639)
chr6 (116-292)||(13431489-13431667)
chr6 (286-345)||(13431859-13431920)
[»] scaffold0516 (1 HSPs)
scaffold0516 (19-240)||(4195-4417)
[»] scaffold0084 (1 HSPs)
scaffold0084 (19-240)||(13427-13649)


Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 5369239 - 5368769
Alignment:
Q  1 cttgttcctcagcatctgtgcttcacaatttttgttataacgtctgctttaagtataacagtaggacaatgcagcagttctaacctccctttgtttgatt 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5369239 cttgttcctcagcatctgtgcttcacaatttttattataacgtctgctttaagtataacagtagggcaatgcagcagttctaacctccctttgtttgatt 5369140  T
Q  101 gatctctaatatagcgattctttgtctcaatgtgtttacggtaaaattttacaataannnnnnnnataggtaaagtttcatagtgtttaatttacgttta 200  Q
    |||||||||||||| ||||| |||||| ||||||||||||||||||||| ||||           |||||||||||||||||||||||||||||||||||    
T  5369139 gatctctaatatagtgattccttgtcttaatgtgtttacggtaaaatttcacaaattttttttttataggtaaagtttcatagtgtttaatttacgttta 5369040  T
Q  201 acaattagattggagaaaaaa-tgataatttataattttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtgg 299  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5369039 acaattagattggagaaaaaaatgataatttataattttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtgg 5368940  T
Q  300 ttcctaatcttcacattcttttctcataacttataatatattaaaacagaacccaaactctataggattgatttcatgttctagagctatatatatggtg 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5368939 ttcctaatcttcacattcttttctcataacttataatatattaaaacagaacccgaactctataggattgatttcatgttctagagctatatatatggtg 5368840  T
Q  400 tgt----gtgtaacgacacacatgagtgaaactatattgattgtttcatatttcaaaaatattgttcttct 466  Q
    |||    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5368839 tgtgtgtgtgtaacgacacacatgagtgaaactatattgattgtttcatatttcaacaatattgttcttct 5368769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 54 - 345
Target Start/End: Complemental strand, 10188388 - 10188092
Alignment:
Q  54 tataacagtaggacaatgcagcagttctaacctccctttgtttgattgatctctaatatagcgattctttgtctcaatgtgtttacggtaaaattttaca 153  Q
    |||| ||||||||||||| ||| |||  |  |||||||| |||  ||||||||||||| || ||||| |||||||||||||| |||| |||||| | |||    
T  10188388 tatagcagtaggacaatgtagcggtttcagtctccctttatttacttgatctctaatacagtgattccttgtctcaatgtgtctacgctaaaatgtcaca 10188289  T
Q  154 ataannnnnnnnataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataatttttt--cttgatttat 250  Q
    |||         |||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||| || ||||||||||||  |||||||||     
T  10188288 atatttttttagatagttaaagtttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataattttttttcttgatttaa 10188189  T
Q  251 attgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcacat--tcttttctcataacttataatatattaaaa 345  Q
    |||||||||||||| ||||||||||||||| | ||||||||| || ||| ||||||| |||||||  ||||||  ||||||||||||||||||||||    
T  10188188 attgtatttcaaataattcaagtaaaaaataataatttatttaatatggctcctaatattcacatactctttttccataacttataatatattaaaa 10188092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 54 - 345
Target Start/End: Complemental strand, 4140302 - 4140007
Alignment:
Q  54 tataacagtaggacaatgcagcagttctaacctccctttgtttgattgatctctaatatagcgattctttgtctcaatgtgtttacggtaaaattttaca 153  Q
    |||| ||||||||||||| ||| |||  |  |||||||| |||  ||||||||||||| || ||||| ||||||| |||||| |||| |||||| | |||    
T  4140302 tatagcagtaggacaatgtagcggtttcagtctccctttatttacttgatctctaatacagtgattcattgtctcgatgtgtctacgctaaaatgtcaca 4140203  T
Q  154 ataannnnnnnnataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataatttttt-cttgatttata 251  Q
    |||         |||| |||||||||||||| ||||||||| ||||||||||||||||| ||||||| |||| || |||||||||||| ||||||||| |    
T  4140202 atatttttttagatagttaaagtttcatagtatttaatttaagtttaacaattagattgaagaaaaatatgacaacttataatttttttcttgatttaaa 4140103  T
Q  252 ttgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcacat--tcttttctcataacttataatatattaaaa 345  Q
    ||||||||||||| ||||||||||||||| | ||||||||| || ||||||||||| |||||||  ||||||  ||||||||||||||||||||||    
T  4140102 ttgtatttcaaataattcaagtaaaaaataataatttatttaatatggttcctaatattcacatactctttttccataacttataatatattaaaa 4140007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 85 - 345
Target Start/End: Original strand, 917113 - 917378
Alignment:
Q  85 ctccctttgtttgattgatctctaatatagcgattctttgtctcaatgtgtttacggtaaaattttacaataannnnnnnnataggtaaagtttcatagt 184  Q
    |||||||| |||  |||||||||||||||| |||||||||||||||||| |||| |||||||| | ||||||         ||||||||| |||||||||    
T  917113 ctccctttatttacttgatctctaatatagtgattctttgtctcaatgtatttatggtaaaatgtcacaatatttttttcgataggtaaaatttcatagt 917212  T
Q  185 gtttaatttacgtttaacaattagattggagaaaaa-atgataatttataa--ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaatt 281  Q
    |||||||||| ||||||||||||||| | ||||||| |||  || || |||  ||||||||||||||| ||||||||||||||| || |||||||||| |    
T  917213 gtttaatttaagtttaacaattagatcgaagaaaaatatgtcaacttgtaattttttttcttgatttacattgtatttcaaatggttgaagtaaaaaaat 917312  T
Q  282 aaaatttatttcatgtggttcctaatcttcac--attcttttctcataacttataatatattaaaa 345  Q
    || |||| ||| || | ||||||||| |||||  ||||||||| |||||| |||||||||||||||    
T  917313 aatatttttttaatatagttcctaattttcacatattcttttcccataacctataatatattaaaa 917378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 116 - 292
Target Start/End: Complemental strand, 28845028 - 28844850
Alignment:
Q  116 gattctttgtctcaatgtgtttacggtaaaattttacaataannnnnnnnataggtaaagtttcatagtgtttaatttacgtttaacaattagattggag 215  Q
    ||||| |||||||||||||||||||||||||| | ||||||         | | ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  28845028 gattcattgtctcaatgtgtttacggtaaaatgtcacaatatttttttagacatgtaaagtttcatattgtttaatttaagtttaacaattagattggag 28844929  T
Q  216 aaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttattt 292  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||    
T  28844928 aaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttattt 28844850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 286 - 345
Target Start/End: Complemental strand, 28844657 - 28844596
Alignment:
Q  286 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 345  Q
    ||||||| || ||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  28844657 tttatttaatatggttcctaatcttcacacattcttttcccataacttataatatattaaaa 28844596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 19 - 345
Target Start/End: Original strand, 37300013 - 37300342
Alignment:
Q  19 tgcttcacaatttttgttataacgtctgctttaagtataacagtaggacaatgcagcagttctaacctccctttgtttgattgatctctaatatagcgat 118  Q
    |||||||||| |||||||  || |||||||| |  |||| ||||||| ||||| |||||||  |  |||||||| |||  ||||||||||||| || |||    
T  37300013 tgcttcacaaattttgttggaatgtctgcttcatatatagcagtagggcaatgtagcagtttcagtctccctttatttacttgatctctaatacagtgat 37300112  T
Q  119 tctttgtctcaatgtgtttacggtaaaattttacaataannnnnnnnataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaa 218  Q
    || ||||||||||||||||||| |||||| | ||||||         ||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37300113 tccttgtctcaatgtgtttacgataaaatgtcacaatatttttttagatatgtaaagtttcatagtgtttaatttaagtttaacaattagattggagaaa 37300212  T
Q  219 aa-atgataatttataa-ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcac--a 314  Q
    || |||| || |||||| |||||||||||||||||||||| |||||||| |||||||||||||| | ||||||||| || || ||||||||||||||  |    
T  37300213 aatatgacaacttataatttttttcttgatttatattgta-ttcaaatggttcaagtaaaaaataataatttatttaatatgattcctaatcttcacata 37300311  T
Q  315 ttcttttctcataacttataatatattaaaa 345  Q
    |||||||| ||||||||||||||||||||||    
T  37300312 ttcttttcccataacttataatatattaaaa 37300342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 116 - 292
Target Start/End: Complemental strand, 36993221 - 36993043
Alignment:
Q  116 gattctttgtctcaatgtgtttacggtaaaattttacaataannnnnnnnataggtaaagtttcatagtgtttaatttacgtttaacaattagattggag 215  Q
    ||||| |||||||| ||||||||||||||||| | ||||||         ||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  36993221 gattccttgtctcactgtgtttacggtaaaatgtcacaatatttttttagataggtaaagtttcatattgtttaatttaagtttaacaattagattggag 36993122  T
Q  216 aaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttattt 292  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||    
T  36993121 aaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttattt 36993043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 345
Target Start/End: Complemental strand, 36992790 - 36992729
Alignment:
Q  286 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 345  Q
    ||||||| || ||||| ||||||||||||  |||||||| ||||||||||||||||||||||    
T  36992790 tttatttaatatggtttctaatcttcacacattcttttcccataacttataatatattaaaa 36992729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 116 - 345
Target Start/End: Original strand, 53828867 - 53829100
Alignment:
Q  116 gattctttgtctcaatgtgtttacggtaaaattttacaataannnnnnnnataggtaaagtttcatagtgtttaatttacgtttaacaattagattggag 215  Q
    ||||| |||||||||||||||||||||||||| | ||||||         ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  53828867 gattccttgtctcaatgtgtttacggtaaaatgtcacaatattttttcagataggtaaagtttcatagtgtttaatttaagtttaacaattagattggag 53828966  T
Q  216 aaaaa-atgataatttataatttt-ttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcac 313  Q
    ||||| |||| || |||||||||| ||||||||||| ||||||||||||||| |||||||||||||| | ||||||||| || |||||||||||||||||    
T  53828967 aaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttatttaatatggttcctaatcttcac 53829066  T
Q  314 --attcttttctcataacttataatatattaaaa 345  Q
      ||||||||| ||||||||||||||||||||||    
T  53829067 atattcttttcccataacttataatatattaaaa 53829100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 54 - 345
Target Start/End: Complemental strand, 21804909 - 21804614
Alignment:
Q  54 tataacagtaggacaatgcagcagttctaacctccctttgtttgattgatctctaatatagcgattctttgtctcaatgtgtttacggtaaaattttaca 153  Q
    |||| ||||||||||||| ||| |||  |  |||||||| |||  ||||||||||||| || ||||||||||||| |||||| |||| |||||| | |||    
T  21804909 tatagcagtaggacaatgtagcggtttcagtctccctttatttacttgatctctaatacagtgattctttgtctctatgtgtctacgctaaaatgtcaca 21804810  T
Q  154 ataannnnnnnnataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataatttttt-cttgatttata 251  Q
    |||         |||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||| || |||||||||||| ||||||||| |    
T  21804809 atatttttttagatagttaaagtttcatagtgtttaatttaagtttaacaattagattggagaaaaatatgacaacttataatttttttcttgatttaaa 21804710  T
Q  252 ttgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcacat--tcttttctcataacttataatatattaaaa 345  Q
    ||||||||| ||| ||||||||||||||| | ||||||||| || ||||||||||| |||||||  ||||||  ||||||||||||||||||||||    
T  21804709 ttgtatttcgaataattcaagtaaaaaataataatttatttaatatggttcctaatattcacatactctttttccataacttataatatattaaaa 21804614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 54 - 345
Target Start/End: Original strand, 21630889 - 21631184
Alignment:
Q  54 tataacagtaggacaatgcagcagttctaacctccctttgtttgattgatctctaatatagcgattctttgtctcaatgtgtttacggtaaaattttaca 153  Q
    |||| ||||||||||||| ||| |||  |  |||||||| |||  ||||||||||||| || ||||| |||||||||||||| |||| |||||| | |||    
T  21630889 tatagcagtaggacaatgtagcggtttcagtctccctttatttacttgatctctaatacagtgattccttgtctcaatgtgtctacgctaaaatgtcaca 21630988  T
Q  154 ataannnnnnnnataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataatttt-ttcttgatttata 251  Q
    |||         |||| |||||||||||||||||||||||| |||||||||||||| |||||||||| |||| || |||||||||| ||||||||||| |    
T  21630989 atatttttttagatagttaaagtttcatagtgtttaatttaagtttaacaattagactggagaaaaatatgacaacttataatttttttcttgatttaaa 21631088  T
Q  252 ttgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcacat--tcttttctcataacttataatatattaaaa 345  Q
    ||||||||| ||| ||||||||||||||| | ||||||||| || ||||||||||| |||||||  ||||||  ||||||||||||||||||||||    
T  21631089 ttgtatttcgaataattcaagtaaaaaataataatttatttaatatggttcctaatattcacatactctttttccataacttataatatattaaaa 21631184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 19 - 334
Target Start/End: Original strand, 34735602 - 34735920
Alignment:
Q  19 tgcttcacaatttttgttataacgtctgctttaagtataacagtaggacaatgcagcagttctaacctccctttgtttgattgatctctaatatagcgat 118  Q
    |||||||||| |||||||  || |||||||| |  |||| ||||||| ||||| ||| |||  |  |||||||| |||  ||||||||||||| || |||    
T  34735602 tgcttcacaaattttgttgaaatgtctgcttcatatatagcagtagggcaatgtagcggtttcagtctccctttatttacttgatctctaatacagtgat 34735701  T
Q  119 tctttgtctcaatgtgtttacggtaaaattttacaataannnnnnnnataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaa 218  Q
    || ||||||||||||||||| | |||||| | ||||||         ||  ||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  34735702 tccttgtctcaatgtgtttatgataaaatgtcacaatatttttttagatttgtaaagtttcatagtttttaatttaagtttaacaattagattggagaaa 34735801  T
Q  219 aa-atgataatttataa-ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcac--a 314  Q
    || |||| || |||||| ||||||||||||||| |||||| |||||||| || ||||||||||| ||||||||||| || || ||||||||||||||  |    
T  34735802 aatatgacaacttataatttttttcttgatttacattgta-ttcaaatggttgaagtaaaaaataaaaatttatttaatatgattcctaatcttcacata 34735900  T
Q  315 ttcttttctcataacttata 334  Q
    |||||||| |||||||||||    
T  34735901 ttcttttcccataacttata 34735920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 116 - 292
Target Start/End: Original strand, 2503038 - 2503216
Alignment:
Q  116 gattctttgtctcaatgtgtttacggtaaaattttacaataannnnnnnnataggtaaagtttcatagtgtttaatttacgtttaacaattagattggag 215  Q
    ||||| |||||||||||||||||||||||||| | ||||||         ||| ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  2503038 gattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttagatatgtaaagtttcatattgtttaatttaagtttaacaattagattggag 2503137  T
Q  216 aaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttattt 292  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||    
T  2503138 aaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttattt 2503216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 116 - 292
Target Start/End: Complemental strand, 46094478 - 46094300
Alignment:
Q  116 gattctttgtctcaatgtgtttacggtaaaattttacaataannnnnnnnataggtaaagtttcatagtgtttaatttacgtttaacaattagattggag 215  Q
    ||||| |||||||| ||||||||||||||||| | ||||||         ||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  46094478 gattccttgtctcactgtgtttacggtaaaatgtcacaatatttttttagataggtaaagtttcatattgtttaatttaagtttaacaattagattggag 46094379  T
Q  216 aaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttattt 292  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||    
T  46094378 aaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttattt 46094300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 20037974 - 20037893
Alignment:
Q  59 cagtaggacaatgcagcagttctaacctccctttgtttgattgatctctaatatagcgattctttgtctcaatgtgtttacg 140  Q
    |||||||||||||  ||||||||| ||||| |||||||  | ||||||||||| |  ||||||||||||||||| |||||||    
T  20037974 cagtaggacaatgtggcagttctagcctccttttgtttactagatctctaatacaatgattctttgtctcaatgcgtttacg 20037893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 345
Target Start/End: Original strand, 2503407 - 2503468
Alignment:
Q  286 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 345  Q
    ||||||| || ||||||||||||||||||  |||||| | ||||||||||||||||||||||    
T  2503407 tttatttaatatggttcctaatcttcacacattctttccccataacttataatatattaaaa 2503468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 345
Target Start/End: Complemental strand, 46094047 - 46093986
Alignment:
Q  286 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 345  Q
    ||||||| || ||||| ||||||||||||  |||||||| ||||||||||||||||||||||    
T  46094047 tttatttaatatggtttctaatcttcacacattcttttcccataacttataatatattaaaa 46093986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 9e-65; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 19 - 345
Target Start/End: Complemental strand, 48268329 - 48268006
Alignment:
Q  19 tgcttcacaatttttgttataacgtctgctttaagtataacagtaggacaatgcagcagttctaacctccctttgtttgattgatctctaatatagcgat 118  Q
    |||||||||| |||||||  ||||||||||| |  |||| ||||||||||||| | ||||| ||  |||| ||| |||  ||||||||       | |||    
T  48268329 tgcttcacaaattttgttggaacgtctgcttcatatatagcagtaggacaatgtaacagttttagtctccttttatttacttgatctc-------gtgat 48268237  T
Q  119 tctttgtctcaatgtgtttacggtaaaattttacaataannnnnnnnataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaa 218  Q
    || |||||||||||||||||||||||||| | ||||||         ||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  48268236 tccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttagataggtaaagtttcatagtgtttaatttaagtttaacaattaaattggagaaa 48268137  T
Q  219 aa-atgataatttataatttttt-cttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatctt--caca 314  Q
    || |||| || |||||||||||| ||||||||| ||||||||||||||| |||||||||||||| | ||||||||| |||||||||||||||||  ||||    
T  48268136 aatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttatttaatgtggttcctaatcttcacaca 48268037  T
Q  315 ttcttttctcataacttataatatattaaaa 345  Q
    || ||||| ||||||||||||||||||||||    
T  48268036 tttttttcccataacttataatatattaaaa 48268006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 116 - 345
Target Start/End: Complemental strand, 35872339 - 35872103
Alignment:
Q  116 gattctttgtctcaatgtgtttacggtaaaattttacaataannnnnnnna--taggtaaagtttcatagtgtttaatttacgtttaacaattagattgg 213  Q
    ||||| |||||||||||||||||||||||||| | ||||||         |  |||||||||||||||||||||||||||| ||||||||||||||||||    
T  35872339 gattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttttagataggtaaagtttcatagtgtttaatttaagtttaacaattagattgg 35872240  T
Q  214 agaaaaa-atgataatttataa--ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatctt 310  Q
    ||||||| |||| || ||||||  |||||||||||||||  |||||||||||||| |||||||||||||| | ||||||||| || |||||| |||||||    
T  35872239 agaaaaatatgacaacttataattttttttcttgatttaccttgtatttcaaatggttcaagtaaaaaataataatttatttaatatggttcataatctt 35872140  T
Q  311 cac--attcttttctcataacttataatatattaaaa 345  Q
    |||  ||||||||| ||||||||||||||||||||||    
T  35872139 cacaaattcttttcccataacttataatatattaaaa 35872103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 116 - 292
Target Start/End: Complemental strand, 52351832 - 52351654
Alignment:
Q  116 gattctttgtctcaatgtgtttacggtaaaattttacaataannnnnnnnataggtaaagtttcatagtgtttaatttacgtttaacaattagattggag 215  Q
    ||||| |||||||||||||||||||||||||| | ||||||         ||| ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  52351832 gattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttagatatgtaaagtttcatattgtttaatttaagtttaacaattagattggag 52351733  T
Q  216 aaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttattt 292  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||    
T  52351732 aaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttattt 52351654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 345
Target Start/End: Complemental strand, 52351462 - 52351401
Alignment:
Q  286 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 345  Q
    ||||||| || ||||||||||||||||||  |||||| | ||||||||||||||||||||||    
T  52351462 tttatttaatatggttcctaatcttcacacattctttccccataacttataatatattaaaa 52351401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 8e-56; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 19 - 345
Target Start/End: Original strand, 22910739 - 22911071
Alignment:
Q  19 tgcttcacaatttttgttataacgtctgctttaagtataacagtaggacaatgcagcagttctaacctccctttgtttgattgatctctaatatagcgat 118  Q
    |||||||||| |||||||  ||||||||||| |  |||| |||||||| |||| ||| |||  |  |||||||| |||  ||||||||||||| || ||     
T  22910739 tgcttcacaaattttgttggaacgtctgcttcatatatagcagtaggataatgtagcggtttcagtctccctttatttacttgatctctaatacagtgac 22910838  T
Q  119 tctttgtctcaatgtgtttacggtaaaattttacaataannnnnnnnataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaa 218  Q
    || || ||||||||||||||||||||||| | ||||||         ||||||||| ||||||||||||||||||  |||||||||||||||||||||||    
T  22910839 tccttatctcaatgtgtttacggtaaaatgtcacaatatttttttaaataggtaaaatttcatagtgtttaattttagtttaacaattagattggagaaa 22910938  T
Q  219 aa-atgataatttataa--ttttttcttgatttatattgtatttcaaatgattcaagtaaaa-aattaaaatttatttcatgtggttcctaatcttc--a 312  Q
    || |||| || ||||||  ||||||||| ||||| ||||||||| ||||| ||||||||||| ||| | ||||||||| || |||||||||||||||  |    
T  22910939 aatatgacaacttataattttttttcttaatttacattgtattttaaatggttcaagtaaaataataataatttatttaatatggttcctaatcttcata 22911038  T
Q  313 cattcttttctcataacttataatatattaaaa 345  Q
     ||||||||| ||||||||||||||||||||||    
T  22911039 tattcttttcccataacttataatatattaaaa 22911071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 39625529 - 39625267
Alignment:
Q  19 tgcttcacaatttttgttataacgtctgctttaagtataacagtaggacaatgcagcagttctaacctccctttgtttgattgatctctaatatagcgat 118  Q
    |||||||||||||||||   |||||||||||    |||| || |||||||||| ||| |||| | || |||||| |||  ||||||||||||| |  |||    
T  39625529 tgcttcacaatttttgtaggaacgtctgcttcgtatatagcaataggacaatgtagcggttccagccaccctttctttacttgatctctaatacattgat 39625430  T
Q  119 tctttgtctcaatgtgtttacggtaaaattttacaataannnnnnnnataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaa 218  Q
    || |||||||||||||||||||||||||| | ||||||         || |||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  39625429 tccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttagatgggtaaagtttcatagtgtataatttaagtttaacaattagattggagaaa 39625330  T
Q  219 aa-atgataatttataa--ttttttcttgatttatattgtatttcaaatgattcaagtaaaaa 278  Q
    || |||| || ||||||  ||||||||||||||| |||||||||||||| |||||||||||||    
T  39625329 aatatgacaacttataattttttttcttgatttacattgtatttcaaataattcaagtaaaaa 39625267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 116 - 292
Target Start/End: Complemental strand, 13788335 - 13788157
Alignment:
Q  116 gattctttgtctcaatgtgtttacggtaaaattttacaataannnnnnnnataggtaaagtttcatagtgtttaatttacgtttaacaattagattggag 215  Q
    ||||| |||||||||||||||||||||||||| | ||||||         ||| ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  13788335 gattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttagatatgtaaagtttcatattgtttaatttaagtttaacaattagattggag 13788236  T
Q  216 aaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttattt 292  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||    
T  13788235 aaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttattt 13788157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 116 - 292
Target Start/End: Original strand, 25805807 - 25805985
Alignment:
Q  116 gattctttgtctcaatgtgtttacggtaaaattttacaataannnnnnnnataggtaaagtttcatagtgtttaatttacgtttaacaattagattggag 215  Q
    ||||| |||||||||||||||||||||||||| | ||||||         ||| ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  25805807 gattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttagatatgtaaagtttcatattgtttaatttaagtttaacaattagattggag 25805906  T
Q  216 aaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttattt 292  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||    
T  25805907 aaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttattt 25805985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 345
Target Start/End: Complemental strand, 13787965 - 13787904
Alignment:
Q  286 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 345  Q
    ||||||| || ||||||||||||||||||  |||||| | ||||||||||||||||||||||    
T  13787965 tttatttaatatggttcctaatcttcacacattctttccccataacttataatatattaaaa 13787904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 345
Target Start/End: Original strand, 25806177 - 25806238
Alignment:
Q  286 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 345  Q
    ||||||| || ||||||||||||||||||  |||||| | ||||||||||||||||||||||    
T  25806177 tttatttaatatggttcctaatcttcacacattctttccccataacttataatatattaaaa 25806238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 116 - 345
Target Start/End: Original strand, 47231980 - 47232214
Alignment:
Q  116 gattctttgtctcaatgtgtttacggtaaaattttacaataannnnnnnnataggtaaagtttcatagtgtttaatttacgtttaacaattagattggag 215  Q
    ||||| |||||| ||||||||||||||||||| | ||||||         ||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  47231980 gattcattgtctaaatgtgtttacggtaaaatgtcacaatatttttttagataggtaaagtatcatagtgtttaatttaagtttaacaattagattggag 47232079  T
Q  216 aaaaa-atgataatttataatttt-ttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcac 313  Q
    ||||| |||| || |||||||||| ||||||||||| ||||||||||||||| |||||||||||||| | ||||||||| || || ||||||||||||||    
T  47232080 aaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttatttaatatgattcctaatcttcac 47232179  T
Q  314 --attcttttctcataa-cttataatatattaaaa 345  Q
      ||||||||| |||||  ||||||||||||||||    
T  47232180 atattcttttcccataattttataatatattaaaa 47232214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 116 - 292
Target Start/End: Original strand, 5766457 - 5766635
Alignment:
Q  116 gattctttgtctcaatgtgtttacggtaaaattttacaataannnnnnnnataggtaaagtttcatagtgtttaatttacgtttaacaattagattggag 215  Q
    ||||| |||||||| ||||||||||||||||| | ||||||         ||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  5766457 gattccttgtctcattgtgtttacggtaaaatgtcacaatatttttttagataggtaaagtttcatattgtttaatttaagtttaacaattagattggag 5766556  T
Q  216 aaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttattt 292  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||    
T  5766557 aaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttattt 5766635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 116 - 292
Target Start/End: Original strand, 25417611 - 25417789
Alignment:
Q  116 gattctttgtctcaatgtgtttacggtaaaattttacaataannnnnnnnataggtaaagtttcatagtgtttaatttacgtttaacaattagattggag 215  Q
    ||||| |||||||||||||||||||||||||| | ||||||         ||| ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  25417611 gattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttagatatgtaaagtttcatattgtttaatttaagtttaacaattagattggag 25417710  T
Q  216 aaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttattt 292  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||    
T  25417711 aaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttattt 25417789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 116 - 292
Target Start/End: Original strand, 39065202 - 39065380
Alignment:
Q  116 gattctttgtctcaatgtgtttacggtaaaattttacaataannnnnnnnataggtaaagtttcatagtgtttaatttacgtttaacaattagattggag 215  Q
    ||||| |||| ||||||||||||||||||||| | ||||||         ||||||||||||||||| ||||||||||| ||||||||||||||||| ||    
T  39065202 gattccttgtttcaatgtgtttacggtaaaatgtcacaatatttttttagataggtaaagtttcatattgtttaatttaagtttaacaattagattgaag 39065301  T
Q  216 aaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttattt 292  Q
    ||||| |||| || |||||| ||||||||||||||||||||||||||||| | |||||||||||||| | |||||||||    
T  39065302 aaaaatatgacaacttataatttttttcttgatttatattgtatttcaaacggttcaagtaaaaaataataatttattt 39065380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 166 - 351
Target Start/End: Complemental strand, 5433236 - 5433047
Alignment:
Q  166 ataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaaaa-atgataatttataat----tttttcttgatttatattgtatttc 260  Q
    ||||||||||||||| |||||||||||||  |||| |||||| |||||||||||| |||| || || ||||    |||||||||||||| ||||||||||    
T  5433236 ataggtaaagtttcaaagtgtttaatttaaatttagcaattatattggagaaaaatatgacaacttttaattttgtttttcttgatttacattgtatttc 5433137  T
Q  261 aaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttcacat-tcttttctcataacttataatatattaaaacagaac 351  Q
    |||||  ||||||||||||  |  ||||||||||||||||||||||||||||||| | ||| | |||||| |||||||||||||||||||||    
T  5433136 aaatggctcaagtaaaaaa--atcatttatttcatgtggttcctaatcttcacatgtttttccccataacctataatatattaaaacagaac 5433047  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 345
Target Start/End: Original strand, 5766893 - 5766954
Alignment:
Q  286 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 345  Q
    ||||||| || ||||| ||||||||||||  |||||||| ||||||||||||||||||||||    
T  5766893 tttatttaatatggtttctaatcttcacacattcttttcccataacttataatatattaaaa 5766954  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 345
Target Start/End: Original strand, 25417981 - 25418042
Alignment:
Q  286 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 345  Q
    ||||||| || ||||||||||||||||||  |||||| | ||||||||||||||||||||||    
T  25417981 tttatttaatatggttcctaatcttcacacattctttccccataacttataatatattaaaa 25418042  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 345
Target Start/End: Original strand, 39065510 - 39065571
Alignment:
Q  286 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 345  Q
    ||||||| || |||||| |||||||||||  |||||||| ||||||||||||||||||||||    
T  39065510 tttatttaatatggttcttaatcttcacacattcttttcccataacttataatatattaaaa 39065571  T

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Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 85 - 345
Target Start/End: Complemental strand, 29457339 - 29457077
Alignment:
Q  85 ctccctttgtttgattgatctctaatatagcgattctttgtctcaatgtgtttacggtaaaattttacaataannnnnnnnataggtaaagtttcatagt 184  Q
    |||||||| |||  ||||||||||||| || ||||| |||||||| |||||||| |||||||| | ||||||         ||||||||| |||||||||    
T  29457339 ctccctttatttacttgatctctaatacagtgattccttgtctcattgtgtttatggtaaaatgtcacaatatttttttcgataggtaaaatttcatagt 29457240  T
Q  185 gtttaatttacgtttaacaattagattggagaaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaatta 282  Q
    ||||||||||  |||||||||||||||||||||||| |||  || |||||| ||||||||||||||| ||||||||||||||| || |||||||||| ||    
T  29457239 gtttaatttaaatttaacaattagattggagaaaaatatgtcaacttataatttttttcttgatttacattgtatttcaaatggttgaagtaaaaaa-ta 29457141  T
Q  283 aaatttatttcatgtggttcctaatcttcac--attcttttctcataacttataatatattaaaa 345  Q
    | |||| ||| || ||||||||||| |||||  ||||||||| |||||| |||||||||||||||    
T  29457140 atattt-tttaatatggttcctaattttcacatattcttttcccataacctataatatattaaaa 29457077  T

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Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 116 - 292
Target Start/End: Original strand, 7572127 - 7572305
Alignment:
Q  116 gattctttgtctcaatgtgtttacggtaaaattttacaataannnnnnnnataggtaaagtttcatagtgtttaatttacgtttaacaattagattggag 215  Q
    ||||| |||||||||||||||||||||||||| | ||||||         ||| ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  7572127 gattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttagatatgtaaagtttcatattgtttaatttaagtttaacaattagattggag 7572226  T
Q  216 aaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttattt 292  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||    
T  7572227 aaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttattt 7572305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 116 - 292
Target Start/End: Original strand, 16666722 - 16666900
Alignment:
Q  116 gattctttgtctcaatgtgtttacggtaaaattttacaataannnnnnnnataggtaaagtttcatagtgtttaatttacgtttaacaattagattggag 215  Q
    ||||| |||||||||||||||||||||||||| | ||||||         ||| ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  16666722 gattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttagatatgtaaagtttcatattgtttaatttaagtttaacaattagattggag 16666821  T
Q  216 aaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttattt 292  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||    
T  16666822 aaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttattt 16666900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 85 - 345
Target Start/End: Complemental strand, 43566134 - 43565868
Alignment:
Q  85 ctccctttgtttgattgatctctaatatagcgattctttgtctcaatgtgtttacggtaaaattttacaataannnnnnnnataggtaaagtttcatagt 184  Q
    |||||||| |||  ||||||||||||| || ||||| |||||||| |||||||| |||||||| | ||||||         ||||||||| ||||||| |    
T  43566134 ctccctttatttacttgatctctaatagagtgattccttgtctcattgtgtttatggtaaaatgtcacaatatttttttcgataggtaaaatttcataat 43566035  T
Q  185 gtttaatttacgtttaacaattagattggagaaaaa-atgataatttataatttt-----ttcttgatttatattgtatttcaaatgattcaagtaaaaa 278  Q
    |||||||||| ||||||||||||||||||||||||| |||  || ||||||||||     ||||||||||| ||||||||||||||| || |||||||||    
T  43566034 gtttaatttaagtttaacaattagattggagaaaaatatgtcaacttataattttttttcttcttgatttacattgtatttcaaatggttgaagtaaaaa 43565935  T
Q  279 attaaaatttatttcatgtggttcctaatcttcac--attcttttctcataacttataatatattaaaa 345  Q
    | ||| |||| ||| || ||||||||||| |||||  ||||||||| |||||| |||||||||||||||    
T  43565934 a-taatattt-tttaatatggttcctaattttcacatattcttttcccataacctataatatattaaaa 43565868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 345
Target Start/End: Original strand, 7572497 - 7572558
Alignment:
Q  286 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 345  Q
    ||||||| || ||||||||||||||||||  |||||| | ||||||||||||||||||||||    
T  7572497 tttatttaatatggttcctaatcttcacacattctttccccataacttataatatattaaaa 7572558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 345
Target Start/End: Original strand, 16667092 - 16667153
Alignment:
Q  286 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 345  Q
    ||||||| || ||||||||||||||||||  |||||| | ||||||||||||||||||||||    
T  16667092 tttatttaatatggttcctaatcttcacacattctttccccataacttataatatattaaaa 16667153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 4e-45; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 18884639 - 18884319
Alignment:
Q  19 tgcttcacaatttttgttataacgtctgctttaagtataacagtaggacaatgcagcagttctaacctccctttgtttgattgatctctaatatagcgat 118  Q
    |||||||||||||||||   |||||||||||    |||| || |||||||||| ||| |||| | || |||||| |||  ||||||||||||| |  |||    
T  18884639 tgcttcacaatttttgtaggaacgtctgcttcgtatatagcaataggacaatgtagcggttccagccaccctttctttacttgatctctaatacattgat 18884540  T
Q  119 tctttgtctcaatgtgtttacggtaaaattttacaataannnnnnnnataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaaa 218  Q
    || ||||||||||||||||||||||||||   ||||||         ||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  18884539 tccttgtctcaatgtgtttacggtaaaatg--acaatatttttttagataggtaaagtttcatagtgtataatttaagtttaacaattagattggagaaa 18884442  T
Q  219 aa-atgataatttataatttt-----ttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttatttcatgtggttcctaatcttc- 311  Q
    || ||||||| ||||||||||     ||||||||||| |||||||||||||| ||||||||||||||  | | ||||||| || | |||| ||||||||     
T  18884441 aatatgataacttataattttttttcttcttgatttacattgtatttcaaataattcaagtaaaaaacaatagtttatttaatatagttcataatcttcg 18884342  T
Q  312 -acattcttttctcataacttat 333  Q
     | ||||||||| || |||||||    
T  18884341 tatattcttttcccacaacttat 18884319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 116 - 292
Target Start/End: Original strand, 13431489 - 13431667
Alignment:
Q  116 gattctttgtctcaatgtgtttacggtaaaattttacaataannnnnnnnataggtaaagtttcatagtgtttaatttacgtttaacaattagattggag 215  Q
    ||||| |||||||||||||||||||||||||| | ||||||         ||| ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  13431489 gattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttagatatgtaaagtttcatattgtttaatttaagtttaacaattagattggag 13431588  T
Q  216 aaaaa-atgataatttataa-ttttttcttgatttatattgtatttcaaatgattcaagtaaaaaattaaaatttattt 292  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||||||||| |||||||||||||| | |||||||||    
T  13431589 aaaaatatgacaacttataatttttttcttgatttacattgtatttcaaatggttcaagtaaaaaataataatttattt 13431667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 345
Target Start/End: Original strand, 13431859 - 13431920
Alignment:
Q  286 tttatttcatgtggttcctaatcttcaca--ttcttttctcataacttataatatattaaaa 345  Q
    ||||||| || ||||||||||||||||||  |||||| | ||||||||||||||||||||||    
T  13431859 tttatttaatatggttcctaatcttcacacattctttccccataacttataatatattaaaa 13431920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 4417 - 4195
Alignment:
Q  19 tgcttcacaatttttgttataacgtctgctttaagtataacagtaggacaatgcagcagttctaacctccctttgtttgattgatctctaatatagcgat 118  Q
    ||||||| | ||||||||| |||||||| || || ||||  |||||||||||| |||  ||||| ||| |||||||||  ||||| ||||||| |  |||    
T  4417 tgcttcatagtttttgttagaacgtctgattcaa-tatagtagtaggacaatgtagcgattctagccttcctttgtttacttgatatctaatacaatgat 4319  T
Q  119 tctttgtctcaatgtgtttacggtaaaattttacaataannnnnnnn-ataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaa 217  Q
    || |||||||||||||||||| ||||||||| ||||||          ||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  4318 tccttgtctcaatgtgtttacagtaaaatttcacaatattttttttagataggtaaagtttcaaagtgtttaatttaagtttaacaattagattggagaa 4219  T
Q  218 -aaaatgataatttataatttttt 240  Q
     ||||||| || ||||||||||||    
T  4218 aaaaatgacaacttataatttttt 4195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 13649 - 13427
Alignment:
Q  19 tgcttcacaatttttgttataacgtctgctttaagtataacagtaggacaatgcagcagttctaacctccctttgtttgattgatctctaatatagcgat 118  Q
    ||||||| |||||||| || ||||| || || |  |||| ||||||||||||| ||| |||||| ||| |||||||||  ||||| ||||||| |  |||    
T  13649 tgcttcataatttttggtagaacgtttgattcatatatagcagtaggacaatgtagcggttctagccttcctttgtttacttgatatctaatacaatgat 13550  T
Q  119 tctttgtctcaatgtgtttacggtaaaattttacaataannnnnnnn-ataggtaaagtttcatagtgtttaatttacgtttaacaattagattggagaa 217  Q
    || |||||||||||||||||  ||||||||  ||||||          ||||||||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  13549 tccttgtctcaatgtgtttatagtaaaattc-acaatattttttttagataggtaaagtttcaaagtgtttaatttaagtttaacaattagattgaagaa 13451  T
Q  218 aaa-atgataatttataatttttt 240  Q
    ||| |||| || ||||||||||||    
T  13450 aaatatgacaacttataatttttt 13427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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