View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9081_low_14 (Length: 479)

Name: NF9081_low_14
Description: NF9081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9081_low_14
NF9081_low_14
[»] chr4 (10 HSPs)
chr4 (8-242)||(52206994-52207228)
chr4 (259-360)||(52206406-52206507)
chr4 (385-479)||(52207343-52207437)
chr4 (284-366)||(52207226-52207308)
chr4 (207-365)||(53522833-53522991)
chr4 (273-366)||(44348836-44348929)
chr4 (207-286)||(30938751-30938829)
chr4 (216-366)||(56459669-56459818)
chr4 (275-329)||(30765437-30765491)
chr4 (274-310)||(10523697-10523733)
[»] chr5 (3 HSPs)
chr5 (207-360)||(2707421-2707572)
chr5 (216-366)||(34064796-34064945)
chr5 (274-360)||(14395342-14395428)
[»] chr8 (4 HSPs)
chr8 (198-360)||(5664178-5664337)
chr8 (237-293)||(31042780-31042836)
chr8 (210-360)||(29703399-29703548)
chr8 (315-366)||(31042729-31042780)
[»] chr3 (2 HSPs)
chr3 (207-302)||(29535556-29535650)
chr3 (274-334)||(54515789-54515849)
[»] chr2 (4 HSPs)
chr2 (201-296)||(37569912-37570005)
chr2 (265-366)||(3130166-3130267)
chr2 (283-334)||(44040024-44040075)
chr2 (259-300)||(20940161-20940202)
[»] chr1 (3 HSPs)
chr1 (216-366)||(19402325-19402474)
chr1 (274-365)||(48578408-48578499)
chr1 (236-301)||(18543602-18543667)
[»] chr7 (1 HSPs)
chr7 (274-360)||(3233378-3233464)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 52206994 - 52207228
Alignment:
Q  8 cagagaagtgtttgaagggagacgaaggtgggtgttgaagacgaggtgaaaaagaaaactcgattgtttacttgaagaacaccttattaaagtaattctt 107  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52206994 cagagaagtgtttgaagggaggcgaaggtgggtgttgaagacgaggtgagaaagaaaactcgattgtttacttgaagaacaccttattaaagtaattctt 52207093  T
Q  108 taaaatacagatctgggaagagtgatctcaacacaaatggtggtggagtcatgcactcatgataaaacannnnnnnnaaggatcagaaagcgttgttgtt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||        |||||||||||||||||||||||    
T  52207094 taaaatacagatctgggaagagtgatctcaacacaaatggtggtggagtcatggactcatgataaaacattttttttaaggatcagaaagcgttgttgtt 52207193  T
Q  208 tggggaagatgaacaaatgaatatgttgatgagaa 242  Q
    |||||||||||||||||||||||||||||||||||    
T  52207194 tggggaagatgaacaaatgaatatgttgatgagaa 52207228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 259 - 360
Target Start/End: Complemental strand, 52206507 - 52206406
Alignment:
Q  259 agacacatgtgagtctttttaatctgaaccatttatttttgatccaagggttgagaagtattctcaccattgtcatgtaactaagccattctcactagat 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  52206507 agacacatgtgagtctttttaatctgaaccatttatttttgatccaagggttgagaagtattctcaccattctcatataactaagccattctcactagat 52206408  T
Q  359 at 360  Q
    ||    
T  52206407 at 52206406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 385 - 479
Target Start/End: Original strand, 52207343 - 52207437
Alignment:
Q  385 actaataatgtgtaatctgctcgtggtgtaatactggccttggaagaaagagtaaatagattcccaacgatcagagaggaagtaaaaagaattga 479  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  52207343 actaataatgtgtaatctgctcgtggtgtaatactggccttggaagaaagagtaaatagattcccagcgatcagagaggaagtaaaaagaattga 52207437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 284 - 366
Target Start/End: Original strand, 52207226 - 52207308
Alignment:
Q  284 gaaccatttatttttgatccaagggttgagaagtattctcaccattgtcatgtaactaagccattctcactagatatatcctc 366  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  52207226 gaaccatttatttttgatccaagggttgagaagtattctaaccattgtcatgtaactaagccattctcactagatatgtcctc 52207308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 207 - 365
Target Start/End: Complemental strand, 53522991 - 53522833
Alignment:
Q  207 ttggggaagatgaacaaatgaatatgttgatgagaattgatagaatatgttaagacacatgtgagtctttttaatctgaaccatttatttttgatc-caa 305  Q
    ||||||||||||||||||| |||  |||| |||||||||||| ||||  |||||||||||||||| | || ||||||||||||||||||| ||| |  ||    
T  53522991 ttggggaagatgaacaaattaatgagttgttgagaattgatacaatagattaagacacatgtgag-cattctaatctgaaccatttatttctgacctaaa 53522893  T
Q  306 gggttgagaagtattctcaccattgtcatgtaactaagccattctcactagatatatcct 365  Q
     |||||| |||| ||||||||||| |||| ||| ||| ||||||||||||||||| ||||    
T  53522892 aggttgataagtgttctcaccattctcatataattaacccattctcactagatatgtcct 53522833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 273 - 366
Target Start/End: Original strand, 44348836 - 44348929
Alignment:
Q  273 ctttttaatctgaaccatttatttttgatccaagggttgagaagtattctcaccattgtcatgtaactaagccattctcactagatatatcctc 366  Q
    ||||||||||| ||||||  |||||||||| ||||||||||||||||| |||||||| |||| ||||| | ||||||||||||||||| |||||    
T  44348836 ctttttaatctcaaccatcaatttttgatctaagggttgagaagtattttcaccattctcatataacttacccattctcactagatatgtcctc 44348929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 30938751 - 30938829
Alignment:
Q  207 ttggggaagatgaacaaatgaatatgttgatgagaattgatagaatatgttaagacacatgtgagtctttttaatctgaa 286  Q
    |||||||||||||||||||||||   ||||||||||||||||||||| ||||||||||||||||| | ||||||||||||    
T  30938751 ttggggaagatgaacaaatgaatgaattgatgagaattgatagaataggttaagacacatgtgag-ccttttaatctgaa 30938829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 216 - 366
Target Start/End: Original strand, 56459669 - 56459818
Alignment:
Q  216 atgaacaaatgaatatgttgatgagaattgatagaatatgttaagacacatgtgagtctttttaatctgaaccatttatttttgatccaagggttgagaa 315  Q
    ||||||||| ||||   |||||||||| |||||||||| || | ||||||||| ||| ||| ||||||| ||||||||||||| ||| || |||||| ||    
T  56459669 atgaacaaaggaatgaattgatgagaaatgatagaataggtga-gacacatgtaagtttttgtaatctggaccatttatttttaatctaaaggttgataa 56459767  T
Q  316 gtattctcaccattgtcatgtaactaagccattctcactagatatatcctc 366  Q
    || ||||||||||| |||| ||| |||| |||||||| |||| | ||||||    
T  56459768 gtgttctcaccattctcatataattaagtcattctcattagaaacatcctc 56459818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 329
Target Start/End: Original strand, 30765437 - 30765491
Alignment:
Q  275 ttttaatctgaaccatttatttttgatccaagggttgagaagtattctcaccatt 329  Q
    |||||||||| |||| || ||||||||| || |||||| ||||||||||||||||    
T  30765437 ttttaatctggaccacttgtttttgatctaaaggttgataagtattctcaccatt 30765491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 10523697 - 10523733
Alignment:
Q  274 tttttaatctgaaccatttatttttgatccaagggtt 310  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  10523697 tttttaatctcaaccatttatttttgatccaatggtt 10523733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 6e-41; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 207 - 360
Target Start/End: Complemental strand, 2707572 - 2707421
Alignment:
Q  207 ttggggaagatgaacaaatgaatatgttgatgagaattgatagaatatgttaagacacatgtgagtctttttaatctgaaccatttatttttgatccaag 306  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| | |||||||||| ||||||||||||| ||| ||     
T  2707572 ttggggaagatgaacaaatggatatgttgatgagaattgatagaataggttaagacacatgtgag-ccttttaatctggaccatttattttttatctaaa 2707474  T
Q  307 ggttgagaagtattctcaccattgtcatgtaactaagccattctcactagatat 360  Q
    |||||| |||  ||||||||||| |||| ||| ||| |||||||||||||||||    
T  2707473 ggttgataag-gttctcaccattctcatataattaacccattctcactagatat 2707421  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 216 - 366
Target Start/End: Original strand, 34064796 - 34064945
Alignment:
Q  216 atgaacaaatgaatatgttgatgagaattgatagaatatgttaagacacatgtgagtctttttaatctgaaccatttatttttgatccaagggttgagaa 315  Q
    ||||||||| ||||   |||||||||| |||||||||| || | ||||||||| ||| ||||||||||  ||||||||||||| ||| || |||||| ||    
T  34064796 atgaacaaaggaatgaattgatgagaaatgatagaataggtga-gacacatgtaagtttttttaatctagaccatttatttttaatctaaaggttgataa 34064894  T
Q  316 gtattctcaccattgtcatgtaactaagccattctcactagatatatcctc 366  Q
    || ||||||||||| |||| ||| |||| |||||||| |||||| ||||||    
T  34064895 gtgttctcaccattctcatataattaagtcattctcattagatacatcctc 34064945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 360
Target Start/End: Original strand, 14395342 - 14395428
Alignment:
Q  274 tttttaatctgaaccatttatttttgatccaagggttgagaagtattctcaccattgtcatgtaactaagccattctcactagatat 360  Q
    |||||||||||  ||||| |||||| |||||| |||||| |||| ||||||||||| |||  ||| |||  |||||||| |||||||    
T  14395342 tttttaatctggtccattcattttttatccaaaggttgataagtgttctcaccattctcacataaataactcattctcattagatat 14395428  T

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Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 198 - 360
Target Start/End: Original strand, 5664178 - 5664337
Alignment:
Q  198 cgttgttgtttggggaagatgaacaaatgaatatgttgatgagaattgatagaatatgttaagacacatgtgagtctttttaatctgaaccatttatttt 297  Q
    |||| |||||| ||||||||||||||||||||  |||||   ||||| |||||||||||||||||||||||||| ||||| |||| ||||||||||||||    
T  5664178 cgttcttgtttagggaagatgaacaaatgaatgagttga---gaattaatagaatatgttaagacacatgtgagacttttaaatccgaaccatttatttt 5664274  T
Q  298 tgatccaagggttgagaagtattctcaccattgtcatgtaactaagccattctcactagatat 360  Q
    | ||| || |||||| |||| ||||||||||| |||| ||| ||| |||||||||||||||||    
T  5664275 tcatctaaaggttgataagtgttctcaccattctcatataattaacccattctcactagatat 5664337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 31042836 - 31042780
Alignment:
Q  237 tgagaattgatagaatatgttaagacacatgtgagtctttttaatctgaaccattta 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31042836 tgagaattgatagaatatgttaagacacatgtgagtctttttaatctgaaccattta 31042780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 210 - 360
Target Start/End: Original strand, 29703399 - 29703548
Alignment:
Q  210 gggaagatgaacaaatgaatatgttgatgagaattgatagaatatgttaagacacatgtgagtctttttaatctgaaccatttatttttgatccaagggt 309  Q
    ||||| |||||||||  |||  ||| |||||||||||||||||| | | ||||||||||||   |||||||| |  |||||| |||||||||| || |||    
T  29703399 gggaaaatgaacaaagaaatgagttaatgagaattgatagaataggatgagacacatgtgaag-tttttaatttagaccattaatttttgatctaaaggt 29703497  T
Q  310 tgagaagtattctcaccattgtcatgtaactaagccattctcactagatat 360  Q
    ||| |||| ||||||||||| |||  ||| |||  ||||||||||||||||    
T  29703498 tgataagtgttctcaccattctcacataattaactcattctcactagatat 29703548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 366
Target Start/End: Complemental strand, 31042780 - 31042729
Alignment:
Q  315 agtattctcaccattgtcatgtaactaagccattctcactagatatatcctc 366  Q
    ||||||||||||||| |||| |||||||| |||||||||||||||| |||||    
T  31042780 agtattctcaccattctcatataactaagtcattctcactagatatgtcctc 31042729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 207 - 302
Target Start/End: Complemental strand, 29535650 - 29535556
Alignment:
Q  207 ttggggaagatgaacaaatgaatatgttgatgagaattgatagaatatgttaagacacatgtgagtctttttaatctgaaccatttatttttgatc 302  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||| | |||||||||| |||||||||||||||||    
T  29535650 ttggggaagatgatcaaatgaatgtgttgatgagaattgatagaataggttaagacacatgtgag-ccttttaatctggaccatttatttttgatc 29535556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 54515849 - 54515789
Alignment:
Q  274 tttttaatctgaaccatttatttttgatccaagggttgagaagtattctcaccattgtcat 334  Q
    ||||||||||||| ||||||| ||||||| || |||| | ||||||||||| |||| ||||    
T  54515849 tttttaatctgaatcatttatatttgatctaaaggttcacaagtattctcatcattctcat 54515789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 201 - 296
Target Start/End: Original strand, 37569912 - 37570005
Alignment:
Q  201 tgttgtttggggaagatgaacaaatgaatatgttgatgagaattgatagaatatgttaagacacatgtgagtctttttaatctgaaccatttattt 296  Q
    |||||||||||||||||||||||||||||  ||| |||||||||||| ||||| ||||| || |||||||| ||||||||||||||||||||||||    
T  37569912 tgttgtttggggaagatgaacaaatgaatgagttaatgagaattgatggaataagttaaaac-catgtgag-ctttttaatctgaaccatttattt 37570005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 265 - 366
Target Start/End: Original strand, 3130166 - 3130267
Alignment:
Q  265 atgtgagtctttttaatctgaaccatttatttttgatccaagggttgagaagtattctcaccattgtcatgtaactaagccattctcactagatatatcc 364  Q
    ||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| | || ||||| |  |||||||| || |||| |||    
T  3130166 atgtgagtctttttaatcttaatcatttatttttgatctaagggttgagaagtattctcaccattcttatataacttactcattctcaatacatatgtcc 3130265  T
Q  365 tc 366  Q
    ||    
T  3130266 tc 3130267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 283 - 334
Target Start/End: Original strand, 44040024 - 44040075
Alignment:
Q  283 tgaaccatttatttttgatccaagggttgagaagtattctcaccattgtcat 334  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  44040024 tgaaccatttgtttttgatccaagggttgagaagtattctcaccattctcat 44040075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 20940202 - 20940161
Alignment:
Q  259 agacacatgtgagtctttttaatctgaaccatttatttttga 300  Q
    ||||||||||||| ||||||||||| ||||||||||||||||    
T  20940202 agacacatgtgagactttttaatctcaaccatttatttttga 20940161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 216 - 366
Target Start/End: Complemental strand, 19402474 - 19402325
Alignment:
Q  216 atgaacaaatgaatatgttgatgagaattgatagaatatgttaagacacatgtgagtctttttaatctgaaccatttatttttgatccaagggttgagaa 315  Q
    ||||||||| ||||   |||||||||| |||||||||| || | ||||||||| ||| ||| ||||||| ||||||||||||| ||| || |||||| ||    
T  19402474 atgaacaaaggaatgaattgatgagaaatgatagaataggtga-gacacatgtaagtttttgtaatctggaccatttatttttaatctaaaggttgataa 19402376  T
Q  316 gtattctcaccattgtcatgtaactaagccattctcactagatatatcctc 366  Q
    || ||||||||||| |||| ||| |||| |||||||| |||| | ||||||    
T  19402375 gtgttctcaccattctcatataattaagtcattctcattagaaacatcctc 19402325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 365
Target Start/End: Complemental strand, 48578499 - 48578408
Alignment:
Q  274 tttttaatctgaaccatttatttttgatccaagggttgagaagtattctcaccattgtcatgtaactaagccattctcactagatatatcct 365  Q
    |||||||||| ||||||| |||||| ||| || | || | | |||||||||||||| |||| |||  ||| |||||||||||||||| ||||    
T  48578499 tttttaatctcaaccattcatttttaatctaatgattaacatgtattctcaccattctcatataaagaaggcattctcactagatatgtcct 48578408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 301
Target Start/End: Original strand, 18543602 - 18543667
Alignment:
Q  236 atgagaattgatagaatatgttaagacacatgtgagtctttttaatctgaaccatttatttttgat 301  Q
    ||||||| |||||||||| | | | |||||||||||  |||||||||| |||||| ||||||||||    
T  18543602 atgagaaatgatagaatagggtgatacacatgtgagattttttaatctcaaccatctatttttgat 18543667  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 274 - 360
Target Start/End: Original strand, 3233378 - 3233464
Alignment:
Q  274 tttttaatctgaaccatttatttttgatccaagggttgagaagtattctcaccattgtcatgtaactaagccattctcactagatat 360  Q
    |||||||||| | ||||||||||| |||| || |||| |||||||||||||||||| |||| |||  ||| |||| |||||||||||    
T  3233378 tttttaatcttatccatttattttagatctaatggttaagaagtattctcaccattctcatataaagaagacattttcactagatat 3233464  T

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