View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9081_low_17 (Length: 449)
Name: NF9081_low_17
Description: NF9081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9081_low_17 |
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| [»] scaffold0210 (1 HSPs) |
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| [»] scaffold0479 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 135 - 390
Target Start/End: Complemental strand, 12715435 - 12715177
Alignment:
| Q |
135 |
cattagctggtactaacatcaactcccctttgcttaaaatattccttggcctcaactatatcctggaaagaaacacaacaaaatgagcaaagttttttgg |
234 |
Q |
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||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||| |
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| T |
12715435 |
cattagctggtaccaacatcaactcccctttgcttcaaatattccttggcctcaactatatcctggaaagaaacacaactaaattagcaaatttttttgg |
12715336 |
T |
|
| Q |
235 |
cat---acgaaaaacaactaactaatatgatcccccaatcatttggatgattatttaactgcttacggagcatttaggaggacagattgacattcatatg |
331 |
Q |
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||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12715335 |
cattgtacgaaaaacaactacgtaatatgatcccacaatcatttggatgattatttaactgcttaacgagcatttaggaggacagattgacattcatatg |
12715236 |
T |
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| Q |
332 |
ataattgaagcactatttgaaccaagtaaatatttggggcttgatattgaatatgttac |
390 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12715235 |
ataattgaagcaccatttgaaccaagtatatatttggggcttgatattgaatatgttac |
12715177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 139 - 384
Target Start/End: Complemental strand, 12722647 - 12722402
Alignment:
| Q |
139 |
agctggtactaacatcaactcccctttgcttaaaatattccttggcctcaactatatcctggaaagaaacacaacaaaatgagcaaagttttttggcata |
238 |
Q |
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||||||||||||||||||||||| | |||| |||||||||||||||||||| ||||||| |||||| ||| ||||||||||||| |||||||||||| |
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| T |
12722647 |
agctggtactaacatcaactccc-tatgctgcaaatattccttggcctcaacaatatcctagaaagataca--acaaaatgagcaacattttttggcata |
12722551 |
T |
|
| Q |
239 |
---cgaaaaacaactaactaatatgatcccccaatcatttggatgattatttaactgcttacggagcatttaggaggacagattgacattcatatgataa |
335 |
Q |
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||| ||||||||||||||||||||||| |||||| |||||||||||||||||||| | ||||||||||||| || ||||||||||| ||||||||| |
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| T |
12722550 |
gcacgataaacaactaactaatatgatcccataatcatctggatgattatttaactgctcaaggagcatttaggaagatagattgacatttatatgataa |
12722451 |
T |
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| Q |
336 |
ttgaagcactatttgaaccaagtaaatatttggggcttgatattgaata |
384 |
Q |
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||||||||| |||| || || | ||| |||||| | ||||||||||||| |
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| T |
12722450 |
ttgaagcaccatttaaatcacgcaaagatttggtggttgatattgaata |
12722402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 139 - 352
Target Start/End: Complemental strand, 12711086 - 12710872
Alignment:
| Q |
139 |
agctggtactaacatcaactcccctttgcttaaaatattccttggcctcaactatatcctggaaagaaacacaacaaaatgagcaaagttttttggcat- |
237 |
Q |
| |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| ||||||| ||||| |||||||||| |
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| T |
12711086 |
agctagtactaacatcaactcccctttgcttcaaatattccttggcctcaacaatatcctgaaaagaaaca--acaaaattagcaacaatttttggcatt |
12710989 |
T |
|
| Q |
238 |
--acgaaaaacaactaactaatatgatcccccaatcatttggatgattatttaactgcttacggagcatttaggaggacagattgacattcatatgataa |
335 |
Q |
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|| | |||||||||||| ||||||||| ||||||| |||||||||||||||||||||| |||||||||| | || ||||||||||| ||||||||| |
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| T |
12710988 |
gtactacaaacaactaactcatatgatcctgcaatcatctggatgattatttaactgcttaaggagcatttataaagatagattgacatttatatgataa |
12710889 |
T |
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| Q |
336 |
ttgaagcactatttgaa |
352 |
Q |
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||||||||| ||||||| |
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| T |
12710888 |
ttgaagcaccatttgaa |
12710872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 12717488 - 12717395
Alignment:
| Q |
17 |
agatcgaaagagttcagattttgtaatccgaatattgcaataaaaaatctggttcggattatataatacgaaccatgggtattttggtcttttttga |
113 |
Q |
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||||||||||||||||||||||||||||| |||||||| | | ||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
12717488 |
agatcgaaagagttcagattttgtaatccaaatattgcta---acaatctggttcggattatataacctgaaccatggatattttggtcttttttga |
12717395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 27023713 - 27023665
Alignment:
| Q |
62 |
aatctggttcggattatataatacgaaccatgggtattttggtcttttt |
110 |
Q |
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||||||||||| |||||||||| | ||||| |||||||||| ||||||| |
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| T |
27023713 |
aatctggttcgaattatataatccaaaccaagggtattttgatcttttt |
27023665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: scaffold0210
Description:
Target: scaffold0210; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 240 - 394
Target Start/End: Original strand, 9008 - 9162
Alignment:
| Q |
240 |
gaaaaacaactaactaatatgatcccccaatcatttggatgattatttaactgcttacggagcatttaggaggacagattgacattcatatgataattga |
339 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9008 |
gaaaaacaactaactaatatgatcccacaatcatttggatgattacttaactgcttacggagcatttaggaggacagattgacattcatatgataattga |
9107 |
T |
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| Q |
340 |
agcactatttgaaccaagtaaatatttggggcttgatattgaatatgttacagtc |
394 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9108 |
agcaccatttgaaccaagtaaatatttggggcttgatattgaatatgttacagtc |
9162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 166 - 352
Target Start/End: Original strand, 11595 - 11782
Alignment:
| Q |
166 |
gcttaaaatattccttggcctcaactatatcctggaaagaaacacaacaaaatgagcaaagttttttggcat---acgaaaaacaactaactaatatgat |
262 |
Q |
| |
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|||| |||||||||||||||||||| |||||||||||||| ||| ||||||||||||| ||||||||||| |||| |||||||||||||||||||| |
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| T |
11595 |
gcttcaaatattccttggcctcaacaatatcctggaaagataca--acaaaatgagcaacattttttggcatcgcacgataaacaactaactaatatgat |
11692 |
T |
|
| Q |
263 |
cccccaatcatttggatgattatttaactgcttacggagcatttaggaggacagattgacattcatatgataattgaagcactatttgaa |
352 |
Q |
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||| |||||| | ||||||||||||||||| | ||||||||||||| || ||||||||||| |||||||||||||||||| ||||||| |
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| T |
11693 |
cccataatcatcttaatgattatttaactgctcaaggagcatttaggaagatagattgacatttatatgataattgaagcaccatttgaa |
11782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 139 - 394
Target Start/End: Original strand, 19713297 - 19713570
Alignment:
| Q |
139 |
agctggtactaacatcaactcccctttgcttaaaatattccttggcctcaactatatcctggaaagaaacacaacaaaatgagcaaagttttttggca-- |
236 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||| | ||||||| |
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| T |
19713297 |
agctggtactgacatcaactcccctttgcttcaaatattccttggcctcaacaatatcctggaaagaa--acaacaaaatgagcaacagtatttggcatt |
19713394 |
T |
|
| Q |
237 |
-tacgaaaaacaactaactaatatgatccc----------ccaatcatttg-----gatgattatttaactgcttacggagcatttaggaggacagattg |
320 |
Q |
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||| | ||| | ||||||||||||||||| ||||||| || |||||||||||||||||||| ||||||||||||||| || || |
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| T |
19713395 |
gtacaacaaagagctaactaatatgatcccgcattaggttacaatcatctggtcatgatgattatttaactgcttaaagagcatttaggaggataggctg |
19713494 |
T |
|
| Q |
321 |
acattcatatgataattgaagcactatttgaaccaagt--aaatatttggggcttgatattgaatatgttacagtc |
394 |
Q |
| |
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|||| |||||||||||||||||| ||||||||||||| ||| |||||||| || | |||||||||||||||||| |
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|
| T |
19713495 |
gcatttatatgataattgaagcaccatttgaaccaagtaaaaagatttggggttttacattgaatatgttacagtc |
19713570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 33945724 - 33945674
Alignment:
| Q |
62 |
aatctggttcggattatataatacgaaccatgggtattttggtcttttttg |
112 |
Q |
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||||||||||| |||||||||| ||||||||||||||||| ||| |||||| |
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| T |
33945724 |
aatctggttcgaattatataatccgaaccatgggtatttttgtcatttttg |
33945674 |
T |
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