View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9081_low_18 (Length: 428)
Name: NF9081_low_18
Description: NF9081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9081_low_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 428
Target Start/End: Original strand, 7451941 - 7452347
Alignment:
| Q |
17 |
gtgaaactgaaaatacaaactagagacacctttaaatcagaacgaaatcaatattctcatccataatgcagtcttctagaagataaaaatgagtggggaa |
116 |
Q |
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|||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
7451941 |
gtgaaactgagaatacaaacaagaggcacctttaaatcagaacgaaatcaatattctcatccataatgcagtcttctaaacaataaaaatgagtggggaa |
7452040 |
T |
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| Q |
117 |
aaagaaacttcatacagacaaagaaatctgaattaactgtcagagattactaggatccagccaagagaagagagacgtgggtggtattattttgattttc |
216 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
7452041 |
aaagaaacttcatagagacaaagaaatctgaattaactgtcagagattactaggatccagccaagaga-----gacgtgggtggtagtattttgattttc |
7452135 |
T |
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| Q |
217 |
tatgctacaaatcttctatagatttgaaactttcannnnnnnaagggaagaatcgaaactttattgtcaactctcttattccacacattaatgaaggaat |
316 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7452136 |
tatgctacaaatcttctatagatttgaaactttcatttttttaagggaagaatcgaaactttattgtcaactctcttattccacacattaatgaaggaat |
7452235 |
T |
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| Q |
317 |
gtatcattattgctgccatatgcagataataaaagccacaccaaaatgcatctttctcatttagttgtatccatttccattacgtttttgacatcatact |
416 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7452236 |
gtatcattattgctaccatatgcagataataaaagccacaccaaaatgcatctttctcatttagttgtatccatttccattacgtttttgacatcatact |
7452335 |
T |
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| Q |
417 |
accatataggtt |
428 |
Q |
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| T |
7452336 |
accatataggtt |
7452347 |
T |
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