View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9081_low_19 (Length: 386)
Name: NF9081_low_19
Description: NF9081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9081_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 25741286 - 25740921
Alignment:
| Q |
1 |
gactaacagaagaattatgccaacggaatttgatacgccatttgctttagtgaaggagtttctgaaaccaccagatgcacgaatatgctcttgtagcaaa |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25741286 |
gactaatagaagaattatgccaacggaatttgatacgccatttgctttagtgaaggagtttctgaaaccaccagatgcacgaatatgctcttgtagcaaa |
25741187 |
T |
|
| Q |
101 |
taacatgcaatgacaaggcacacgattattccaactaggtcgtttctaaaggtgcttgcaactagatcaggagatacaacgatcaaaagtatcaaagcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
25741186 |
taacatgcaatgacaaggcacacgattattccaactaggtcgtttctaaaggtgcttgcaactagatcaggagatacaacaatcaagagtatcaaagcac |
25741087 |
T |
|
| Q |
201 |
ccggcaactccaaccaatctgcagaaacaatcagaaagagtaattatgtatattcaatatttcctcgtgcgnnnnnnnnataaaggacgaactgaaccaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25741086 |
ccggcaactccaaccaatctgcagaaacaatcagaaagagtaattatgtatattcaatatttcctcgtgcg-tttttttataaaggacgaactgaaccaa |
25740988 |
T |
|
| Q |
301 |
caatggatgaatcttagtggatcgtgacaacaaggtcaccatgttacttacttactctgccgtgtat |
367 |
Q |
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| T |
25740987 |
caacggatgaatcttagtggatcgtgacaacaaggtcactctgtcacttgcatactctgccgagtat |
25740921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 25744820 - 25744588
Alignment:
| Q |
1 |
gactaacagaagaattatgccaacggaatttgatacgccatttgctttagtgaaggagtttctgaaaccaccagatgcacgaatatgctcttgtagcaaa |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25744820 |
gactaacagaagaattatgccaatggaatttgatacgccatttgctctagtgaaggagtttctgaaaccaccagatgcacgaatatgctcttgtagcaaa |
25744721 |
T |
|
| Q |
101 |
taacatgcaatgacaaggcacacgattattccaactaggtcgtttctaaaggtgcttgcaactagatcaggagatacaacgatcaaaagtatcaaagcac |
200 |
Q |
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||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25744720 |
taacatgcaatgacaaggcacacaattactccaacaaggtcgtttctaaaggtgcttgcaactagatcaggagatacaacaatcaaaagtatcaaagcac |
25744621 |
T |
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| Q |
201 |
ccggcaactccaaccaatctgcagaaacaatca |
233 |
Q |
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| T |
25744620 |
ccggcaactccaaccaatctgcagaaacaatca |
25744588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 311 - 370
Target Start/End: Complemental strand, 25740922 - 25740863
Alignment:
| Q |
311 |
atcttagtggatcgtgacaacaaggtcaccatgttacttacttactctgccgtgtatatg |
370 |
Q |
| |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
25740922 |
atctaagtggatcgtgacaacaaggtcaccgtgttacttacttactctgctgtgtatatg |
25740863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 199
Target Start/End: Complemental strand, 12514819 - 12514625
Alignment:
| Q |
5 |
aacagaagaattatgccaacggaatttgatacgccatttgctttagtgaaggagtttctgaaaccaccagatgcacgaatatgctcttgtagcaaataac |
104 |
Q |
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||||||||||||||||||| | |||||||| |||| ||||| || || || | ||| |||||||||||||| ||||| || |||||||||||||||| |
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| T |
12514819 |
aacagaagaattatgccaattgtatttgatattccatgagcttttgttaaagaatctctaaaaccaccagatgcccgaatttgttcttgtagcaaataac |
12514720 |
T |
|
| Q |
105 |
atgcaatgacaaggcacacgattattccaactaggtcgtttctaaaggtgcttgcaactagatcaggagatacaacgatcaaaagtatcaaagca |
199 |
Q |
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|||||||||||||||| || | | |||||| ||| ||||||||||| |||||| |||||| |||| ||||| || | ||| ||||||||| |
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| T |
12514719 |
atgcaatgacaaggcatactaccaagccaacttcatcgcttctaaaggtgtttgcaaatagatcgggagcaacaacaataagaagaatcaaagca |
12514625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 12510938 - 12510825
Alignment:
| Q |
7 |
cagaagaattatgccaacggaatttgatacgccatttgctttagtgaaggagtttctgaaaccaccagatgcacgaatatgctcttgtagcaaataacat |
106 |
Q |
| |
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||||||||||||||||| | |||||| | ||||| ||||| ||||| || | ||| || ||||| ||||| |||||||| ||||| |||||||||||| |
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| T |
12510938 |
cagaagaattatgccaattgtatttgacatgccataagcttttgtgaatgaatctctaaagccaccggatgcccgaatatgttcttgcagcaaataacat |
12510839 |
T |
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| Q |
107 |
gcaatgacaaggca |
120 |
Q |
| |
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||||||| |||||| |
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| T |
12510838 |
gcaatgataaggca |
12510825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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