View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9081_low_21 (Length: 381)
Name: NF9081_low_21
Description: NF9081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9081_low_21 |
 | |
|
| [»] scaffold0415 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 7 - 363
Target Start/End: Complemental strand, 2831261 - 2830905
Alignment:
| Q |
7 |
ggagcagagaaatatgaatatgtctaaacattccaatggacaggaacacaataaaaattcccaagagttagagatgaaactctcacaatgtgaaacaagt |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2831261 |
ggagcagaaaaatatgaatatgtctaaacattccaatggacaggaacacaataaaaattcccaagagttagagatgaaactctcacaatgtgaaacaagt |
2831162 |
T |
|
| Q |
107 |
gatgatgaagatcaaaaagcattggatgatcttgtcaaggagaaaagtgatgccaaggagacacacttgcttgagnnnnnnnttatagacttgtatggtg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2831161 |
gatgatgaagatcaaaaagcattggatgatcttgtcaaggagaaaagtgatgccaaggagacacacttgcttgagaaaaaaattatagacttgtatggtg |
2831062 |
T |
|
| Q |
207 |
aaattgaaatgtataggagggacaaagaggagttagagatgcaaatagagcagattgcactagactatgagatattaaaacaggaaaaccacaagcttgt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2831061 |
aaattgaaatgtataggagggacaaagaggagttagagatgcaaatagagcagattgcactagactatgagatattaaaacaggaaaaccacaagcttgt |
2830962 |
T |
|
| Q |
307 |
acataagctagagcaaagccatctgcaggaacagttaaacatccaatatgagtgttc |
363 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2830961 |
acataagctagagcaaagccaactgcaggaacagttaaacatccaatatgagtgttc |
2830905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 200 - 297
Target Start/End: Original strand, 4071 - 4168
Alignment:
| Q |
200 |
tatggtgaaattgaaatgtataggagggacaaagaggagttagagatgcaaatagagcagattgcactagactatgagatattaaaacaggaaaacca |
297 |
Q |
| |
|
||||||||||| || ||||||||||| |||||||| |||||||||||||| || |||||| ||||||| |||||||| || || |||||||||||||| |
|
|
| T |
4071 |
tatggtgaaatagagatgtataggagagacaaagatgagttagagatgcagatggagcagcttgcactggactatgaaattttgaaacaggaaaacca |
4168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 200 - 297
Target Start/End: Original strand, 40799441 - 40799538
Alignment:
| Q |
200 |
tatggtgaaattgaaatgtataggagggacaaagaggagttagagatgcaaatagagcagattgcactagactatgagatattaaaacaggaaaacca |
297 |
Q |
| |
|
||||||||||| || ||||||||||| |||||||| |||||||||||||| || |||||| ||||||| |||||||| || || |||||||||||||| |
|
|
| T |
40799441 |
tatggtgaaatagagatgtataggagagacaaagatgagttagagatgcagatggagcagcttgcactggactatgaaattttgaaacaggaaaacca |
40799538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University