View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9081_low_26 (Length: 315)

Name: NF9081_low_26
Description: NF9081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9081_low_26
NF9081_low_26
[»] chr1 (1 HSPs)
chr1 (134-300)||(30721863-30722031)
[»] chr4 (3 HSPs)
chr4 (190-300)||(32208431-32208541)
chr4 (81-198)||(32208902-32209019)
chr4 (134-231)||(2748335-2748431)
[»] chr5 (1 HSPs)
chr5 (240-300)||(35876568-35876628)


Alignment Details
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 134 - 300
Target Start/End: Complemental strand, 30722031 - 30721863
Alignment:
Q  134 tattacgaactacattcgagaaaaatatgaactacttttcttcgagatattgatctttaagttaatcaatatttaactaataacttaaattaatttgt-- 231  Q
    |||||||||||||| ||||||||||||||||| |||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||      
T  30722031 tattacgaactacagtcgagaaaaatatgaaccacttttcttctacatattgat-tttaagttaatcaatatttaactaataacttaaattaatttgtaa 30721933  T
Q  232 -tnnnnnnncaaataatttatattaaccaaattaattagttttcttttcatttggtataagggtattttt 300  Q
              |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  30721932 aaaaaaaataaaataatttatattaaccaaattaattagttttctttttatttggtataagggcattttt 30721863  T

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Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 190 - 300
Target Start/End: Complemental strand, 32208541 - 32208431
Alignment:
Q  190 ttaagttaatcaatatttaactaataacttaaattaatttgttnnnnnnncaaataatttatattaaccaaattaattagttttcttttcatttggtata 289  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32208541 ttaagttaatcaatatttaactaataacttaaattaatttgttaaaaaaacaaataatttatattaaccaaattaattagttttctttttatttggtata 32208442  T
Q  290 agggtattttt 300  Q
    |||||||||||    
T  32208441 agggtattttt 32208431  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 81 - 198
Target Start/End: Complemental strand, 32209019 - 32208902
Alignment:
Q  81 ttaaaatcagtgggtcccaccaatttttgagtcttcacacaactgcnnnnnnntattacgaactacattcgagaaaaatatgaactacttttcttcgaga 180  Q
    ||||||| | ||||| ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||| ||||    
T  32209019 ttaaaattaatgggttccaccaatttttgagtcttcacacaactgcaaaaaaatattacgaactacattcgagaaaaatatgaactacttttctttgaga 32208920  T
Q  181 tattgatctttaagttaa 198  Q
    ||||||||||||||||||    
T  32208919 tattgatctttaagttaa 32208902  T

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Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 2748335 - 2748431
Alignment:
Q  134 tattacgaactacattcgagaaaaatatgaactacttttcttcgagatattgatctttaagttaatcaatatttaactaataacttaaattaatttgt 231  Q
    ||||||||||||||   ||||||||||||||| |||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2748335 tattacgaactacagctgagaaaaatatgaaccacttttcttctacatattgat-tttaagttaatcaatatttaactaataacttaaattaatttgt 2748431  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 240 - 300
Target Start/End: Complemental strand, 35876628 - 35876568
Alignment:
Q  240 caaataatttatattaaccaaattaattagttttcttttcatttggtataagggtattttt 300  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  35876628 caaataatttatattaatcaaattaattagttttctttttatttggtataagggtattttt 35876568  T

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