View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9081_low_3 (Length: 781)

Name: NF9081_low_3
Description: NF9081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9081_low_3
NF9081_low_3
[»] chr8 (2 HSPs)
chr8 (148-765)||(5369324-5369945)
chr8 (10-87)||(5369216-5369293)
[»] chr3 (4 HSPs)
chr3 (242-313)||(46358008-46358078)
chr3 (242-313)||(32010172-32010242)
chr3 (262-294)||(48892998-48893030)
chr3 (268-306)||(823048-823086)
[»] chr5 (4 HSPs)
chr5 (243-313)||(17853106-17853175)
chr5 (268-313)||(8731323-8731368)
chr5 (271-300)||(21391932-21391961)
chr5 (243-300)||(26405175-26405231)
[»] chr2 (4 HSPs)
chr2 (268-306)||(30965946-30965984)
chr2 (242-313)||(29487485-29487554)
chr2 (243-313)||(8793502-8793571)
chr2 (268-313)||(25504539-25504584)
[»] chr7 (3 HSPs)
chr7 (268-313)||(26385811-26385856)
chr7 (242-293)||(44755972-44756022)
chr7 (268-313)||(47456724-47456769)
[»] chr6 (1 HSPs)
chr6 (243-313)||(3880239-3880308)
[»] chr4 (1 HSPs)
chr4 (242-300)||(41117594-41117651)
[»] chr1 (4 HSPs)
chr1 (262-300)||(7451906-7451944)
chr1 (242-300)||(9312966-9313023)
chr1 (242-300)||(11439646-11439703)
chr1 (268-313)||(46603746-46603791)


Alignment Details
Target: chr8 (Bit Score: 509; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 148 - 765
Target Start/End: Original strand, 5369324 - 5369945
Alignment:
Q  148 tcataattctctatatgatctctttctctctattgcttttcaactaagagtttttctcaacacttgagtatcaagttccattacannnnnnnnn----aa 243  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||             ||    
T  5369324 tcataattctctatatgatctctttctctctattgcttttcaagtaagagtttttcccaacacttgagtatcaagttccattacattttttttttttaaa 5369423  T
Q  244 acaacaaattttattttgacaactagatccctgctcaagacgaacaaagaccggtgattcagaaaatacatatatgagcagtcctctctccattcgtatc 343  Q
    ||||||||||||||||||| |||||||||| |||| |||||||| ||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  5369424 acaacaaattttattttgataactagatccttgcttaagacgaataaagatcggtgattcagagaatacatatatgagcagccctctctccattcgtatc 5369523  T
Q  344 actgccacaataaaaaatgttattaataatcgagaccatgttgtctcttttgtttatatttgtttgtgaggatcatggatgagagaaatataccttctct 443  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5369524 actgccacaataaaaaatgttattaataattgagaccatgttgtctcttttgtttatatttgtttgtgaggatcatggatgagagaaatataccttctct 5369623  T
Q  444 cactgcacaattaaaatattttctacaaacattgcattgataggtgctttacaatctagagttgtgttccaattaatttattttaattgtagaaaatggg 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5369624 cactgcacaattaaaatattttctacaaacattgcattgataggtgctttacaatctagagttgtgttccaattaatttattttaattgtagaaaatggg 5369723  T
Q  544 gtgctcgagtaagacaagtataccataaaaagggttatttggattacttcgtttggcatgtagtttagctggaacacgnnnnnnnctttgactgaaagtc 643  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  5369724 gtgctcgagtaagacaagtataccataaaaagggttatttggattacttcgtttggcatgtagtttagctggaacacgtttttttctttgactgaaagtc 5369823  T
Q  644 ttttaaaaacacttaatgataaaattaaccttacaaacatgcattaatttatgcattggtagttaatcaagccacatgaaaaatcaactcattctgtaag 743  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  5369824 ttttaaaaacacttaatgataaaattaaccttacaaacatgcattaatttatgcattggtagttaatcaagccacgtgaaaaatcaactcattatgtaag 5369923  T
Q  744 cttcaaataatttaaccattgt 765  Q
    ||||||||||||||||||||||    
T  5369924 cttcaaataatttaaccattgt 5369945  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 5369216 - 5369293
Alignment:
Q  10 gaagcagagatgctgaggaacaagatgtgcgtcacatctttggagcatttgaattaaagggaaaggtgctttacaagt 87  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  5369216 gaagcacagatgctgaggaacaagatgtgtgtcacatctttggagcatttgaattaaagggacaggtgctttacaagt 5369293  T

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Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 242 - 313
Target Start/End: Original strand, 46358008 - 46358078
Alignment:
Q  242 aaacaacaaattttattttgacaactagatccctgctcaagacgaacaaagaccggtgattcagaaaataca 313  Q
    ||||||||||||||||||  ||||| |||||||||||||||||||||| ||||| | |||||||||||||||    
T  46358008 aaacaacaaattttattta-acaaccagatccctgctcaagacgaacagagaccagagattcagaaaataca 46358078  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 242 - 313
Target Start/End: Complemental strand, 32010242 - 32010172
Alignment:
Q  242 aaacaacaaattttattttgacaactagatccctgctcaagacgaacaaagaccggtgattcagaaaataca 313  Q
    ||||||||||||||||||  ||||| |||||||| ||||||||||||| ||| |||||||||||| ||||||    
T  32010242 aaacaacaaattttattta-acaaccagatccctactcaagacgaacagagatcggtgattcagagaataca 32010172  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 48892998 - 48893030
Alignment:
Q  262 acaactagatccctgctcaagacgaacaaagac 294  Q
    |||||||||||||||||||||||||||||||||    
T  48892998 acaactagatccctgctcaagacgaacaaagac 48893030  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 268 - 306
Target Start/End: Original strand, 823048 - 823086
Alignment:
Q  268 agatccctgctcaagacgaacaaagaccggtgattcaga 306  Q
    ||||| |||||||||||||||| ||||||||||||||||    
T  823048 agatcgctgctcaagacgaacagagaccggtgattcaga 823086  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 243 - 313
Target Start/End: Original strand, 17853106 - 17853175
Alignment:
Q  243 aacaacaaattttattttgacaactagatccctgctcaagacgaacaaagaccggtgattcagaaaataca 313  Q
    |||||||||||||||||  | ||| |||||||||||||||| ||| | | |||||||||||||||||||||    
T  17853106 aacaacaaattttatttaaa-aaccagatccctgctcaagatgaatataaaccggtgattcagaaaataca 17853175  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 8731368 - 8731323
Alignment:
Q  268 agatccctgctcaagacgaacaaagaccggtgattcagaaaataca 313  Q
    ||||||||||||||||| |||| | |||||||||||||| ||||||    
T  8731368 agatccctgctcaagacaaacagaaaccggtgattcagagaataca 8731323  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 271 - 300
Target Start/End: Original strand, 21391932 - 21391961
Alignment:
Q  271 tccctgctcaagacgaacaaagaccggtga 300  Q
    ||||||||||||||||||||||||||||||    
T  21391932 tccctgctcaagacgaacaaagaccggtga 21391961  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 26405175 - 26405231
Alignment:
Q  243 aacaacaaattttattttgacaactagatccctgctcaagacgaacaaagaccggtga 300  Q
    ||||||||||||||||   ||||| ||||  |||||||||||||||||||||||||||    
T  26405175 aacaacaaattttattaa-acaaccagatttctgctcaagacgaacaaagaccggtga 26405231  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 268 - 306
Target Start/End: Original strand, 30965946 - 30965984
Alignment:
Q  268 agatccctgctcaagacgaacaaagaccggtgattcaga 306  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  30965946 agatccctactcaagacgaacaaagaccggtgattcaga 30965984  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 242 - 313
Target Start/End: Complemental strand, 29487554 - 29487485
Alignment:
Q  242 aaacaacaaattttattttgacaactagatccctgctcaagacgaacaaagaccggtgattcagaaaataca 313  Q
    |||||||||||||||||   | ||| |||||||||||||||| ||||| |||||||||||||| | ||||||    
T  29487554 aaacaacaaattttatta--aaaaccagatccctgctcaagatgaacagagaccggtgattcatagaataca 29487485  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 243 - 313
Target Start/End: Complemental strand, 8793571 - 8793502
Alignment:
Q  243 aacaacaaattttattttgacaactagatccctgctcaagacgaacaaagaccggtgattcagaaaataca 313  Q
    |||||| ||||||||||  | ||| ||||| ||||| || |||||||||||||||||||| ||||||||||    
T  8793571 aacaacgaattttatttata-aaccagatctctgctaaaaacgaacaaagaccggtgatttagaaaataca 8793502  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 25504539 - 25504584
Alignment:
Q  268 agatccctgctcaagacgaacaaagaccggtgattcagaaaataca 313  Q
    ||||||||||||||||| |||| | |||||||||||||| ||||||    
T  25504539 agatccctgctcaagacaaacagaaaccggtgattcagagaataca 25504584  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 26385811 - 26385856
Alignment:
Q  268 agatccctgctcaagacgaacaaagaccggtgattcagaaaataca 313  Q
    |||||||||||||||||||||| |||||| ||||||||||| ||||    
T  26385811 agatccctgctcaagacgaacagagaccgatgattcagaaactaca 26385856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 44756022 - 44755972
Alignment:
Q  242 aaacaacaaattttattttgacaactagatccctgctcaagacgaacaaaga 293  Q
    |||||||||||||||||   ||||||||||||||||||||||||||| ||||    
T  44756022 aaacaacaaattttattaa-acaactagatccctgctcaagacgaacgaaga 44755972  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 47456724 - 47456769
Alignment:
Q  268 agatccctgctcaagacgaacaaagaccggtgattcagaaaataca 313  Q
    ||||| |||||||||||||||| ||||||||||  |||||||||||    
T  47456724 agatctctgctcaagacgaacagagaccggtgaaacagaaaataca 47456769  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 243 - 313
Target Start/End: Original strand, 3880239 - 3880308
Alignment:
Q  243 aacaacaaattttattttgacaactagatccctgctcaagacgaacaaagaccggtgattcagaaaataca 313  Q
    ||||||||||||||||   ||||  |||||||||||||||||||||| ||||||||||  | |||||||||    
T  3880239 aacaacaaattttattaa-acaatcagatccctgctcaagacgaacagagaccggtgaaactgaaaataca 3880308  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 41117594 - 41117651
Alignment:
Q  242 aaacaacaaattttattttgacaactagatccctgctcaagacgaacaaagaccggtga 300  Q
    |||||||||||||||||   ||||||||||| |||||||||||||||| |||| |||||    
T  41117594 aaacaacaaattttattaa-acaactagatctctgctcaagacgaacagagacaggtga 41117651  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 262 - 300
Target Start/End: Original strand, 7451906 - 7451944
Alignment:
Q  262 acaactagatccctgctcaagacgaacaaagaccggtga 300  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  7451906 acaactagatctctgctcaagacgaacagagaccggtga 7451944  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 9312966 - 9313023
Alignment:
Q  242 aaacaacaaattttattttgacaactagatccctgctcaagacgaacaaagaccggtga 300  Q
    |||||||||||||||||   ||||| ||||| |||||||||||||||| ||||||||||    
T  9312966 aaacaacaaattttattaa-acaacgagatctctgctcaagacgaacagagaccggtga 9313023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 11439646 - 11439703
Alignment:
Q  242 aaacaacaaattttattttgacaactagatccctgctcaagacgaacaaagaccggtga 300  Q
    |||||||||||||||||   ||||| ||||| |||||||||||||||||||| ||||||    
T  11439646 aaacaacaaattttattaa-acaaccagatctctgctcaagacgaacaaagatcggtga 11439703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 46603791 - 46603746
Alignment:
Q  268 agatccctgctcaagacgaacaaagaccggtgattcagaaaataca 313  Q
    |||||||| ||||||||||| ||||||||||| |||||| ||||||    
T  46603791 agatccctactcaagacgaataaagaccggtggttcagataataca 46603746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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