View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9081_low_31 (Length: 291)
Name: NF9081_low_31
Description: NF9081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9081_low_31 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 3 - 291
Target Start/End: Complemental strand, 49755639 - 49755346
Alignment:
| Q |
3 |
aacacaatgtgcaagcacactagtaccattatact-atatattatag----cttgaaatcacatcctagaagaaccttgtgatttcaatttagggaccca |
97 |
Q |
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| T |
49755639 |
aacacaatgtgcaagcacactagtaccattatacttatatattatagatagcttgaaatcacatcctagaagaaccttgtgatttcaatttagggaccca |
49755540 |
T |
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| Q |
98 |
gatgtaattatccgctgggaaaaagtgacacacagaagaggttcctggtgtaacctcaagaacttgaaatgaaacatgacttggtgcccattgtgatgta |
197 |
Q |
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| T |
49755539 |
gatgtaattatccgctgggaaaaagtgacacacagaagaggttcctggtgtaacctcaagaacttgaaatgaaacatgacttggtgcccattgtgatgta |
49755440 |
T |
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| Q |
198 |
tccatatgacaaaccgccatagcttccaccttatctccattctcaccaaccaatgaagctctatacaccctattatcactttcttggccatgac |
291 |
Q |
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| T |
49755439 |
tccatatgacaaaccgccatagcttccaccttatctccattctcaccaaccaatgaagctctatacaccctattatcactttcttggccatgac |
49755346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 52 - 283
Target Start/End: Original strand, 54448689 - 54448920
Alignment:
| Q |
52 |
gaaatcacatcctagaagaaccttgtgatttcaatttagggacccagatgtaattatccgctgggaaaaagtgacacacagaagaggttcctggtgtaac |
151 |
Q |
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| T |
54448689 |
gaaatcacatgctagaagaaccttgtgatttcactttagggacccaaatgtaattgtccgctgggaaaaaatgacacacagaagagcttcctggtgtaac |
54448788 |
T |
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| Q |
152 |
ctcaagaacttgaaatgaaacatgacttggtgcccattgtgatgtatccatatgacaaaccgccatagcttccaccttatctccattctcaccaaccaat |
251 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||| |||| || || |||||||||||||||||||| ||||| |
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| T |
54448789 |
accaagaacttgaaatgaaacatgactaggtgcccattgtgatgtatctaagtgacaaaccaccatggcctcaaccttatctccattctcaccccccaat |
54448888 |
T |
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| Q |
252 |
gaagctctatacaccctattatcactttcttg |
283 |
Q |
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| T |
54448889 |
aaaactttatacaccctattctcactttcttg |
54448920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 285
Target Start/End: Complemental strand, 26208824 - 26208622
Alignment:
| Q |
83 |
caatttagggacccagatgtaattatccgctgggaaaaagtgacacacagaagaggttcctggtgtaacctcaagaacttgaaatgaaacatgacttggt |
182 |
Q |
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|||||| || ||||| ||| ||||||| || || ||||||||||| ||| ||| ||||||| ||| ||||||| |||||||||||||||| || |
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| T |
26208824 |
caattttggaacccatatgaaattatcagcaggaaaaaagtgacagacattagaacttcctggcacaacaccaagaacctgaaatgaaacatgaccatgt |
26208725 |
T |
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| Q |
183 |
gcccattgtgatgtatccatatgacaaaccgccatagcttccaccttatctccattctcaccaaccaatgaagctctatacaccctattatcactttctt |
282 |
Q |
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|||| || || ||||||||||||||||| |||||||||||||| |||| ||||| ||||| || | |||| ||||||| | |||||| |||||||||| |
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| T |
26208724 |
ccccaatgagaagtatccatatgacaaacaaccatagcttccaccatatccccattatcaccgacaagtgaaactctatatatcctattttcactttctt |
26208625 |
T |
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| Q |
283 |
ggc |
285 |
Q |
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||| |
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| T |
26208624 |
ggc |
26208622 |
T |
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