View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9081_low_4 (Length: 674)
Name: NF9081_low_4
Description: NF9081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9081_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 151 - 648
Target Start/End: Complemental strand, 44798462 - 44797960
Alignment:
| Q |
151 |
ctgagcattgtgtagaattaagagtgatgaagttttcaagaatttgttttcatggtaaagatgaaggagagagagtgatacacatactcaatctgtttct |
250 |
Q |
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| T |
44798462 |
ctgagcattgtgtagaattaagagtggtgaagttttcaagaatttgttttcatggtaaagatgaaggagagagagtgatacacatactcaatctgtttct |
44798363 |
T |
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| Q |
251 |
tggcctaatcttgaattgttgtgtcttctaaattcaaacaaaacattacatttctagttatgattcttcacataggaccattgaggggttaaactgaaat |
350 |
Q |
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| T |
44798362 |
tgttctaatcttgaattgttgtgtcttctaaattcaaacaaaacattacatttttagttaggattcttcacataggaccattgaggggttaaactgaaat |
44798263 |
T |
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| Q |
351 |
aaagtcagtg---tagttttaaatttgtttgtagtagcgttag-taacaacagaatttcatttacttggtgaaaatcttgttaaaaaataaagcatcaaa |
446 |
Q |
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| T |
44798262 |
aaagtcagtgtagtagttttaaatttgtttgtagtagcgttagttttaaacagaatttcatttacttggtgaaaatcttgttaaaaaataaatcatcaaa |
44798163 |
T |
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| Q |
447 |
gttaaacttaatctatctttcttatctttatgctggtgttatattttgacccacttctagtctttggttatacatagggtggataagta-nnnnnnngta |
545 |
Q |
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| T |
44798162 |
gttaaacttaatctatctttcttatctttatgctggtgttatattttgacccacttctagtctttggttatacataggatggataagtattttttttgta |
44798063 |
T |
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| Q |
546 |
ctaaatacaatgaatgttgatcaaacgttgttgtatgataatagtgtttgagtattttgttataatttgaagcttgataggttgtttattgtttctggaa |
645 |
Q |
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| T |
44798062 |
ctaaatacaatgaatgttgttcaaacgttgttgtatgataatagtgtctgagtattttgttataatttgaagcttgataggttgtttattgtttctggaa |
44797963 |
T |
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| Q |
646 |
agg |
648 |
Q |
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| T |
44797962 |
agg |
44797960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 44798612 - 44798533
Alignment:
| Q |
1 |
gaaagacaagagtgttgttgttttgtgagagtaatggcagtgtctgtgtaggaagcatcaccaaagagtgtgatgttttg |
80 |
Q |
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| T |
44798612 |
gaaagacaagtgtgttgttgttttgtgagagtaatggaagtgtctgtgtaggaagcatcaccaaagagtgtgatgttttg |
44798533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 547 - 606
Target Start/End: Complemental strand, 44788995 - 44788936
Alignment:
| Q |
547 |
taaatacaatgaatgttgatcaaacgttgttgtatgataatagtgtttgagtattttgtt |
606 |
Q |
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|||||| ||||||||| | |||||| || |||||| |||||||||||||||||||||||| |
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| T |
44788995 |
taaataaaatgaatgtagttcaaactttcttgtatcataatagtgtttgagtattttgtt |
44788936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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