View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9081_low_40 (Length: 237)
Name: NF9081_low_40
Description: NF9081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9081_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 31540524 - 31540746
Alignment:
| Q |
1 |
gcacttgatctcgaccattaaattcataattcatatttcatgagtatgatctgtgacccaatcatcccatcccatgttttttcaaattgtagcatagcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31540524 |
gcacttgatctcgaccattaaattcataattcatatttcatgagtatgatctgtgacccaatcatcccatcccatgttttttcaaattgtagcataacat |
31540623 |
T |
|
| Q |
101 |
atctaagatatgttggataaaattctaccgggctatgataattggagcactcaggttaaactctatatgttcagccgtgtgtatgagggggtttgttaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
31540624 |
atctaagatatgttggataaaattctaccgggctatgataattggagcactaaggttaaactctatatgttcagccgtgtgcatgagcgggtttgttaag |
31540723 |
T |
|
| Q |
201 |
agtcctgtattggatgacatatg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
31540724 |
agtcctgtattggatgacatatg |
31540746 |
T |
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