View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9081_low_45 (Length: 208)

Name: NF9081_low_45
Description: NF9081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9081_low_45
NF9081_low_45
[»] chr5 (4 HSPs)
chr5 (38-193)||(15424637-15424792)
chr5 (13-141)||(15432382-15432510)
chr5 (13-70)||(15080851-15080908)
chr5 (141-193)||(41951849-41951903)
[»] chr3 (3 HSPs)
chr3 (141-193)||(4607405-4607457)
chr3 (141-175)||(17742963-17742997)
chr3 (141-175)||(19044283-19044317)
[»] chr8 (1 HSPs)
chr8 (146-193)||(5690729-5690778)
[»] chr2 (1 HSPs)
chr2 (146-193)||(6016962-6017011)
[»] chr4 (1 HSPs)
chr4 (139-193)||(13436551-13436607)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 38 - 193
Target Start/End: Complemental strand, 15424792 - 15424637
Alignment:
Q  38 atgaccagtagaagtgcttgcagaggtgtaccttctcctttctaacaacaaacagaaaatagatatcagtttgaacgatctaaatcaaatattatacaac 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15424792 atgaccagtagaagtgcttgcagaggtgtaccttctcctttctaacaacaaacagaaaatagatatcagtttgaacgatctaaatcaaatattatacaac 15424693  T
Q  138 aaatattcgagatatatgttagatactagttagttagtgaagtaatagtatatata 193  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15424692 aaatattcgagatatatgttagatactagttagttagtgaagtagtagtatatata 15424637  T

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Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 15432510 - 15432382
Alignment:
Q  13 aaatgaagaggtggttgaaggaaggatgaccagtagaagtgcttgcagaggtgtaccttctcctttctaacaacaaacagaaaatagatatcagtttgaa 112  Q
    |||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||| |||| ||||| |||||| ||||||||| |||    
T  15432510 aaatcaagaggtggttgaaggaatgatggccagtagaagtgcttgcagaggtgtaccttctcttttctgacaagaaacaaaaaataaatatcagttagaa 15432411  T
Q  113 cgatctaaatcaaatattatacaacaaat 141  Q
    | || ||||||||||||||||||| ||||    
T  15432410 caatgtaaatcaaatattatacaataaat 15432382  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 15080851 - 15080908
Alignment:
Q  13 aaatgaagaggtggttgaaggaaggatgaccagtagaagtgcttgcagaggtgtacct 70  Q
    |||| |||||||||||||||||| |||| ||||||||| |||||||||||| ||||||    
T  15080851 aaatcaagaggtggttgaaggaatgatggccagtagaactgcttgcagaggcgtacct 15080908  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 41951903 - 41951849
Alignment:
Q  141 tattcgagatatatgttagatactagttag--ttagtgaagtaatagtatatata 193  Q
    |||| |||||||||||||||||||||||||  ||||||||||| |||||||||||    
T  41951903 tattagagatatatgttagatactagttagcattagtgaagtagtagtatatata 41951849  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 4607405 - 4607457
Alignment:
Q  141 tattcgagatatatgttagatactagttagttagtgaagtaatagtatatata 193  Q
    |||| ||||||||||||||||||||| |||||||||||||| |||||||||||    
T  4607405 tatttgagatatatgttagatactaggtagttagtgaagtagtagtatatata 4607457  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 17742963 - 17742997
Alignment:
Q  141 tattcgagatatatgttagatactagttagttagt 175  Q
    |||| ||||||||||||||||||||||||||||||    
T  17742963 tattagagatatatgttagatactagttagttagt 17742997  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 19044283 - 19044317
Alignment:
Q  141 tattcgagatatatgttagatactagttagttagt 175  Q
    |||| ||||||||||||||||||||||||||||||    
T  19044283 tattagagatatatgttagatactagttagttagt 19044317  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 5690729 - 5690778
Alignment:
Q  146 gagatatatgttagatactagttag--ttagtgaagtaatagtatatata 193  Q
    |||||||||||||||||||||||||  ||||||||||| |||||||||||    
T  5690729 gagatatatgttagatactagttagcattagtgaagtagtagtatatata 5690778  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 6017011 - 6016962
Alignment:
Q  146 gagatatatgttagatactagttag--ttagtgaagtaatagtatatata 193  Q
    |||||||||||||||||||||||||  ||||| ||||| |||||||||||    
T  6017011 gagatatatgttagatactagttagcattagtcaagtagtagtatatata 6016962  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 13436607 - 13436551
Alignment:
Q  139 aatattcgagatatatgttagatactagttag--ttagtgaagtaatagtatatata 193  Q
    |||||| ||||||||||||||||||| |||||  | ||||||||| |||||||||||    
T  13436607 aatattagagatatatgttagatactggttagcataagtgaagtagtagtatatata 13436551  T

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