View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9081_low_5 (Length: 630)

Name: NF9081_low_5
Description: NF9081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9081_low_5
NF9081_low_5
[»] chr6 (2 HSPs)
chr6 (18-615)||(12266236-12266843)
chr6 (131-615)||(12426100-12426584)
[»] chr4 (3 HSPs)
chr4 (135-484)||(55955771-55956126)
chr4 (137-602)||(55959214-55959685)
chr4 (537-615)||(55956176-55956254)
[»] chr5 (5 HSPs)
chr5 (558-605)||(7140708-7140755)
chr5 (558-609)||(7152535-7152586)
chr5 (19-73)||(7713525-7713579)
chr5 (18-68)||(33369426-33369476)
chr5 (20-68)||(13864342-13864390)
[»] chr8 (1 HSPs)
chr8 (18-73)||(33620891-33620946)
[»] scaffold0003 (1 HSPs)
scaffold0003 (19-69)||(320906-320956)
[»] chr2 (1 HSPs)
chr2 (20-74)||(12599880-12599934)
[»] chr1 (1 HSPs)
chr1 (18-72)||(1824654-1824708)
[»] chr3 (1 HSPs)
chr3 (20-73)||(43345022-43345075)
[»] scaffold0122 (1 HSPs)
scaffold0122 (20-68)||(14201-14249)
[»] chr7 (3 HSPs)
chr7 (18-66)||(10236918-10236966)
chr7 (20-68)||(28230777-28230825)
chr7 (18-74)||(29726792-29726848)


Alignment Details
Target: chr6 (Bit Score: 548; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 18 - 615
Target Start/End: Complemental strand, 12266843 - 12266236
Alignment:
Q  18 gaaccttgcatacattatgtattgttcatgataactgagttaaactcacgaagacagatagatgattaatactatatga-----tatgatatgatat--- 109  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||     |||||||||||||       
T  12266843 gaaccttgcatacattatgcattgttcatgataactgagttaaactcacgaggacatatagatgattaatactatatgagatgatatgatatgatatgat 12266744  T
Q  110 --gatagaggaattaatttagtgtagtaactaacccatatcacggctttgacattgtcatgtgtgattgggatattaagactgccgctttgctgaatgcg 207  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12266743 atgatagaggaattaatttagtgtagtaactaacccatatcacggctttgacattgtcatgtgtgattgggatattaagactgccgctttgctgaatgcg 12266644  T
Q  208 cagaagaacatcaactatattttcaccttgcaggtcatggtttgattgatgctcgtttataattttttcaaaaatcatatctaacttcttttgaaaattc 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12266643 cagaagaacatcaactatattttcaccttgcaggtcatggtttgattgatgcgcgtttataattttttcaaaaatcatatctaacttcttttgaaaattc 12266544  T
Q  308 ttcaatctaggtttcatcccactaatgaaatgaataggtttaaatgaagggaacacatcagaaacatcaaaataatttaccatttccattgattgcttga 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12266543 ttcaatctaggtttcatcccactaatgaaatgaataggtttaaatgaagggaacacatcagaaacatcaaaataatttaccatttccattgattgcttga 12266444  T
Q  408 gcaaacacaaaagttcatcttcatacttagattttttaccaaaagttgcccttgaaataaaggaacttaccaaagaactaatcattttagaaagatcaag 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12266443 gcaaacacaaaagttcatcttcatacttagattttttaccaaaagttgcccttgaaataaaggaacttaccaaagaactaatcattttagaaagatcaag 12266344  T
Q  508 tggatcttgacaagaagaggaatgaatgaattgtatcatcttttccaccccatcttctctaatggaagaaaaagattggacccttttagcactaagaagt 607  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12266343 tggatcttgacaagaagtggaatgaatgaattgtatcatcttttccaccccatcttctctaatggaagaaaaagattggacccttttagcactaagaagt 12266244  T
Q  608 tctgatgt 615  Q
    ||||||||    
T  12266243 tctgatgt 12266236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 131 - 615
Target Start/End: Original strand, 12426100 - 12426584
Alignment:
Q  131 tagtaactaacccatatcacggctttgacattgtcatgtgtgattgggatattaagactgccgctttgctgaatgcgcagaagaacatcaactatatttt 230  Q
    |||||||||||||| || ||||||||||||||||| ||||| |||||||| |  |||||||  | |||||| ||||||| ||||||||| |||| |||||    
T  12426100 tagtaactaacccagattacggctttgacattgtcttgtgttattgggatctcgagactgctacgttgctggatgcgcaaaagaacatctactagatttt 12426199  T
Q  231 caccttgcaggtcatggtttgattgatgctcgtttataattttttcaaaaatcatatctaacttcttttgaaaattcttcaatctaggtttcatcccact 330  Q
    ||||||||||| || |||||||||||||||||||||||||  |||| ||||||||||| ||||||||||| ||||||| |||| | ||||| |||||| |    
T  12426200 caccttgcagggcagggtttgattgatgctcgtttataatgctttctaaaatcatatccaacttcttttgcaaattctccaattttggttttatcccagt 12426299  T
Q  331 aatgaaatgaataggtttaaatgaagggaacacatcagaaacatcaaaataatttaccatttccattgattgcttgagcaaacacaaaagttcatcttca 430  Q
    ||| ||||||||||||||||||||||| |||| ||||| ||||||||||  | || |||||||||||| |||||||||||||||||| || |||||||||    
T  12426300 aattaaatgaataggtttaaatgaaggaaacaaatcagcaacatcaaaaccacttgccatttccattgcttgcttgagcaaacacaacagatcatcttca 12426399  T
Q  431 tacttagattttttaccaaaagttgcccttgaaataaaggaacttaccaaagaactaatcattttagaaagatcaagtggatcttgacaagaagaggaat 530  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  12426400 tacttagattttttaccaaaagttgcccttgaaacaaaggaacttaccaaagaactaaccattttagtaagatcaagtggatcttgacaagaagaggaat 12426499  T
Q  531 gaatgaattgtatcatcttttccaccccatcttctctaatggaagaaaaagattggacccttttagcactaagaagttctgatgt 615  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12426500 gaatgaattgtatcatcttttccaccccatcttctctaatggaagaaaaagattggacccttttagcactaagaagttctgatgt 12426584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 1e-49; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 135 - 484
Target Start/End: Original strand, 55955771 - 55956126
Alignment:
Q  135 aactaacccatatcacggctttgacattgtcatgtgtgattgggatattaagactgccgctttgctgaatgcgcagaagaacatcaactatattttcacc 234  Q
    |||||||||| |  ||||||||||||||||| | |||||| |||||||  | | || | |||||||||| ||||| |||||||||||||| |||||||||    
T  55955771 aactaacccacaggacggctttgacattgtcgtctgtgatagggatatcgaaattgtcactttgctgaacgcgcaaaagaacatcaactagattttcacc 55955870  T
Q  235 ttgcaggtcatgg------tttgattgatgctcgtttataattttttcaaaaatcatatctaacttcttttgaaaattcttcaatctaggtttcatccca 328  Q
     ||   | |||||      |||||||||||||| || |||||  |||| |||||| |||| | ||||||||| | ||||| |||| ||| |||| ||| |    
T  55955871 ctgtttgccatggattgaatttgattgatgctctttgataatgctttctaaaatcttatccagcttcttttgcatattctgcaatttagctttcgtccga 55955970  T
Q  329 ctaatgaaatgaataggtttaaatgaagggaacacatcagaaacatcaaaataatttaccatttccattgattgcttgagcaaacacaaaagttcatctt 428  Q
     | || | |||||||||||||||||||||||||| ||||| |   |||||   | || ||||||||| || |||||||||||||| ||||||||||||||    
T  55955971 gtgataagatgaataggtttaaatgaagggaacagatcagcagggtcaaacccacttgccatttccactgtttgcttgagcaaactcaaaagttcatctt 55956070  T
Q  429 catacttagattttttaccaaaagttgcccttgaaataaaggaacttaccaaagaa 484  Q
    |||| ||||||||||||||||| | ||| ||||||| ||||| |||||||||||||    
T  55956071 catatttagattttttaccaaatgctgctcttgaaacaaaggtacttaccaaagaa 55956126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 137 - 602
Target Start/End: Original strand, 55959214 - 55959685
Alignment:
Q  137 ctaacccatatcacggctttgacattgtcatgtgtgattgggatattaagactgccgctttgctgaatgcgcagaagaacatcaactatattttcacctt 236  Q
    |||| |||||| |||||||||||||| || |||||||||||||  |  |||  ||| ||||| |||| ||||| |||||||||||||| ||||||| |||    
T  55959214 ctaagccatattacggctttgacattctcttgtgtgattgggacctcgagatagccactttgttgaacgcgcaaaagaacatcaactaaattttcatctt 55959313  T
Q  237 gcaggtc---atggtttga------ttgatgctcgtttataattttttcaaaaatcatatctaacttcttttgaaaattcttcaatctaggtttcatccc 327  Q
    ||| | |   |||| ||||      |||||||||||| |||||  |||| |||||  ||||  ||||||| || | | ||| |||||||| |||  |||     
T  55959314 gcatgccggcatggattgaatttgtttgatgctcgttgataatgctttctaaaattttatccgacttcttctgcatactctgcaatctagctttagtcct 55959413  T
Q  328 actaatgaaatgaataggtttaaatgaagggaacacatcagaaacatcaaaataatttaccatttccattgattgcttgagcaaacacaaaagttcatct 427  Q
    | |||| |||||||||| ||| ||||||| ||||| ||||  |||||| |||  | |  ||||||||| ||||| |||||||||||| | ||||||||||    
T  55959414 agtaataaaatgaatagctttgaatgaagcgaacaaatcaacaacatcgaaaccactcgccatttccactgattccttgagcaaacatagaagttcatct 55959513  T
Q  428 tcatacttagattttttaccaaaagttgcccttgaaataaaggaacttaccaaagaactaatcattttagaaagatcaagtggatcttgacaagaagagg 527  Q
    ||||| |||||||||| |||||| |  || ||||||| ||||| ||||||||||||   |   ||||||| || ||||||||| |  ||| |||  ||      
T  55959514 tcatatttagatttttaaccaaacgccgctcttgaaacaaaggtacttaccaaagagaaagctattttagtaacatcaagtgg-tagtga-aag-tgaac 55959610  T
Q  528 aatgaatgaattgtatcatcttttccaccccatcttctctaatggaagaaaaagattggacccttttagcactaa 602  Q
      |||||| ||||||| | |||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  55959611 cttgaatggattgtataagcttttctacctcatcttctctaatggaagaaaaagattgaacccttttagcactaa 55959685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 537 - 615
Target Start/End: Original strand, 55956176 - 55956254
Alignment:
Q  537 attgtatcatcttttccaccccatcttctctaatggaagaaaaagattggacccttttagcactaagaagttctgatgt 615  Q
    ||||||| | ||||| |||| | ||||||||||||||||||||| | || |||||||||||||||||||| | ||||||    
T  55956176 attgtatgagcttttgcacctcttcttctctaatggaagaaaaataatgaacccttttagcactaagaagctgtgatgt 55956254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 558 - 605
Target Start/End: Complemental strand, 7140755 - 7140708
Alignment:
Q  558 catcttctctaatggaagaaaaagattggacccttttagcactaagaa 605  Q
    |||||||||||||| ||||||||||||| |||||||||||||| ||||    
T  7140755 catcttctctaatgtaagaaaaagattgaacccttttagcacttagaa 7140708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 558 - 609
Target Start/End: Complemental strand, 7152586 - 7152535
Alignment:
Q  558 catcttctctaatggaagaaaaagattggacccttttagcactaagaagttc 609  Q
    |||||||||||||  ||||||||||||| |||||||||||||| ||||||||    
T  7152586 catcttctctaatataagaaaaagattgaacccttttagcacttagaagttc 7152535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 7713579 - 7713525
Alignment:
Q  19 aaccttgcatacattatgtattgttcatgataactgagttaaactcacgaagaca 73  Q
    ||||||||||| |||||| ||| |||||   ||||||||||||||||||||||||    
T  7713579 aaccttgcatatattatgcattattcatatcaactgagttaaactcacgaagaca 7713525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 33369426 - 33369476
Alignment:
Q  18 gaaccttgcatacattatgtattgttcatgataactgagttaaactcacga 68  Q
    |||| ||||||||||||||||||||||||   ||||||||||| |||||||    
T  33369426 gaacgttgcatacattatgtattgttcataccaactgagttaagctcacga 33369476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 13864390 - 13864342
Alignment:
Q  20 accttgcatacattatgtattgttcatgataactgagttaaactcacga 68  Q
    |||||||||| ||||||||||||||||   ||||||||||| |||||||    
T  13864390 accttgcatatattatgtattgttcataccaactgagttaagctcacga 13864342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 33620946 - 33620891
Alignment:
Q  18 gaaccttgcatacattatgtattgttcatgataactgagttaaactcacgaagaca 73  Q
    |||||||| ||| |||||| ||||| |||  |||||||||||||||||||||||||    
T  33620946 gaaccttgtatatattatgcattgtccatactaactgagttaaactcacgaagaca 33620891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 320906 - 320956
Alignment:
Q  19 aaccttgcatacattatgtattgttcatgataactgagttaaactcacgaa 69  Q
    |||||| |||| |||||||||||||||||  ||||||||||| ||||||||    
T  320906 aaccttacatatattatgtattgttcatgcaaactgagttaagctcacgaa 320956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 12599880 - 12599934
Alignment:
Q  20 accttgcatacattatgtattgttcatgataactgagttaaactcacgaagacag 74  Q
    |||||||||| |||||||||||| |||  |||||||||||| || ||||||||||    
T  12599880 accttgcatatattatgtattgtccatactaactgagttaagcttacgaagacag 12599934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 1824708 - 1824654
Alignment:
Q  18 gaaccttgcatacattatgtattgttcatgataactgagttaaactcacgaagac 72  Q
    |||||||||||| |||||||||||||  ||  ||||||||||||||| |||||||    
T  1824708 gaaccttgcatatattatgtattgtttctgtcaactgagttaaactcccgaagac 1824654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 43345022 - 43345075
Alignment:
Q  20 accttgcatacattatgtattgttcatgataactgagttaaactcacgaagaca 73  Q
    |||||||||| ||||||||||||||||   ||||||| ||||||||||| ||||    
T  43345022 accttgcatatattatgtattgttcataccaactgagctaaactcacgaggaca 43345075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 14201 - 14249
Alignment:
Q  20 accttgcatacattatgtattgttcatgataactgagttaaactcacga 68  Q
    |||||||||| |||||| |||||||||   |||||||||||||||||||    
T  14201 accttgcatatattatgcattgttcataccaactgagttaaactcacga 14249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 10236918 - 10236966
Alignment:
Q  18 gaaccttgcatacattatgtattgttcatgataactgagttaaactcac 66  Q
    ||||||||||||||||||| ||||||| |   |||||||||||||||||    
T  10236918 gaaccttgcatacattatgcattgttcttaccaactgagttaaactcac 10236966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 28230825 - 28230777
Alignment:
Q  20 accttgcatacattatgtattgttcatgataactgagttaaactcacga 68  Q
    ||||||||||||| ||| ||||| ||| | |||||||||||||||||||    
T  28230825 accttgcatacatcatgcattgtccattacaactgagttaaactcacga 28230777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 29726848 - 29726792
Alignment:
Q  18 gaaccttgcatacattatgtattgttcatgataactgagttaaactcacgaagacag 74  Q
    |||||||||||| |||||  ||||||||||  ||||||||||| ||||||| |||||    
T  29726848 gaaccttgcatatattatacattgttcatgtcaactgagttaagctcacgaggacag 29726792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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