View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9081_low_6 (Length: 598)
Name: NF9081_low_6
Description: NF9081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9081_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 222 - 584
Target Start/End: Complemental strand, 37514088 - 37513726
Alignment:
| Q |
222 |
ctcatttgggaattgtgtagaaaatgggggtcatctcaaggaagatcttcccagcttgtgagagcatgtgtgtttgctgtcctgctttgaggtcaagatc |
321 |
Q |
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| T |
37514088 |
ctcatttgggaattgtgtagaaaatgggggtcatctcaaggaagatcttcccagcttgtgagagcatgtgtgtttgctgtcctgctttgaggtcaagatc |
37513989 |
T |
|
| Q |
322 |
aagacaaccagtcaaacgttacagaaaacttcttgctgatatctttccaaaatccccggttcgtgtgttatcataccttttttaaatgagtcttagcgaa |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37513988 |
aagacaaccagtcaaacgttacagaaaacttcttgctgatatctttccaaaatccccggttcgtgtgttatcataccttttttaaatgagtcttagcgaa |
37513889 |
T |
|
| Q |
422 |
tgatttgaatttgaaaataggagtaattgaatgtaaccttgtgtgtcggatatcggacatgcattcgatttgaaatgtttgtgctgatgctctttttcaa |
521 |
Q |
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| T |
37513888 |
tgatttgaatttgaaaataggagtaattgaatgtaaccttgtgtgtcggatatcggacatgcattcgatttgaaatgtttgtgctgatgctctttttcaa |
37513789 |
T |
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| Q |
522 |
aaccattatgatccaatagaaaagcaaaatgttagtaggcaatgtagtattcataatgatgtc |
584 |
Q |
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| T |
37513788 |
aaccattatgatccaatagaaaagcaaaatgttagtaggcaatgtagtattcataatgctgtc |
37513726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 255 - 584
Target Start/End: Original strand, 36842044 - 36842374
Alignment:
| Q |
255 |
tctcaaggaagatcttcccagcttgtgagagcatgtgtgtttgct-gtcctgctttgaggtcaagatcaagacaaccagtcaaacgttacagaaaacttc |
353 |
Q |
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| T |
36842044 |
tctcaaggaatatcttcccagcttgtgagagcatgtgtgtttacttgtcctgctttgaggtcaagatcaagacagccagtcaaatgttacagaaaacttc |
36842143 |
T |
|
| Q |
354 |
ttgctgatatctttccaaaatccccggttcgtgtgttatcataccttttttaaatgagtcttagcgaatgatttgaatttgaaaataggagtaattgaat |
453 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
36842144 |
ttgctgatatttttccaaaatccccggttcatgtgttatcatacctttttttaatgagttttagcgaatgatttaaatttgaaaataggagtaattgaat |
36842243 |
T |
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| Q |
454 |
gtaaccttgtgtgtcggatatcggacatgcattcgatttgaaatgtttgtgctgatgctctttttcaaaaccattatgatccaatagaaaagcaaaatgt |
553 |
Q |
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| T |
36842244 |
gtaaccacgtgtgtcgcacattggacatgcattcgatttgaaatgtttgtgctgatgctctttttcaaaaccattatgatccaatagaaaaacaaaatgt |
36842343 |
T |
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| Q |
554 |
tagtaggcaatgtagtattcataatgatgtc |
584 |
Q |
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|||||||||||||||||||||||||| |||| |
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| T |
36842344 |
tagtaggcaatgtagtattcataatgctgtc |
36842374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 37514316 - 37514169
Alignment:
| Q |
1 |
ttgtttttgctttatttattcctttctggttcgacggttttctccnnnnnnnn-attaattttgaaaaatctaaaccaaccatgtttgtaacttatgtag |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37514316 |
ttgtttttgctttatttattcctttctggttcgacggttttctcctttttttttattaattttgaaaaatctaaaccaaccatgtttgtaacttatgtag |
37514217 |
T |
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| Q |
100 |
tactcttgagtatgttctttggatcctatc-ttagttgcattttatag |
146 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37514216 |
tactcttgagtatgttctttggatcctatctttagttgcattttatag |
37514169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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