View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9081_low_8 (Length: 569)
Name: NF9081_low_8
Description: NF9081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9081_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 12 - 355
Target Start/End: Complemental strand, 6485456 - 6485113
Alignment:
| Q |
12 |
agagacggtgttattcacacgtgtatgtctgttttaacgggacatgatggtcccgttaaatgtttagcagtggagcaggatcgcgaatctgatgctagag |
111 |
Q |
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| T |
6485456 |
agagacggtgttattcacacgtgtatgtctgttttaacgggacatgatggtcccgttaaatgtttagcagtggagcaggatcgcgaatctgatgctagag |
6485357 |
T |
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| Q |
112 |
gcgatcaacggtggatattgtatagtgggagtttggataaatcggttaaggtttggagtgtttcggagagtatgcaggtacaacaccgtatgacttctat |
211 |
Q |
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| T |
6485356 |
gcgatcaacggtggatattgtatagtgggagtttggataaatcggttaaggtttggagtgtttcggagagtatgcaggtacagcaccgtatgacttctat |
6485257 |
T |
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| Q |
212 |
gacttctgaaggggactcgataccttcggaatccgatagcagttactcctcaagtcggcccagtcttaataagagaaactaattatttgggccttgttta |
311 |
Q |
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| T |
6485256 |
gacttctgaaggggactcgataccttcggaatccgatagcagttactcctcaagtcggcccagtcttaataagagaaactaattatttgggccttgttta |
6485157 |
T |
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| Q |
312 |
tctggtccaatttgatgctactgccacgtctccttgtgggatga |
355 |
Q |
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| T |
6485156 |
tctggtccaatttgatgctactgccacgtctccttgtgagatga |
6485113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 428 - 517
Target Start/End: Complemental strand, 6485040 - 6484951
Alignment:
| Q |
428 |
actttgattgatggtttttgtaaagctgggacaggcaagttggaagattatgatctttatttatgtaatataatctgtgtaagaatatat |
517 |
Q |
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| T |
6485040 |
actttgattgatggtttttgtaaagctgggacaggcaagttggaagattatgatctttatttatgtaatataatctgtgtaagaatatat |
6484951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 6916822 - 6916776
Alignment:
| Q |
122 |
gtggatattgtatagtgggagtttggataaatcggttaaggtttgga |
168 |
Q |
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| T |
6916822 |
gtggattttgtatagtggaagtttggataagtccgttaaggtttgga |
6916776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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