View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9081_low_9 (Length: 555)
Name: NF9081_low_9
Description: NF9081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9081_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 292 - 542
Target Start/End: Complemental strand, 4930305 - 4930056
Alignment:
| Q |
292 |
tcaaacaaactaggtgcataccaccacccaaacccaaagcttgaagaacaacgacggtgtctccacctacgatagcaacctcaatcttccgacatggagg |
391 |
Q |
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| T |
4930305 |
tcaaacaaaacaggtgcataccaccacccaaacccgaagcttgaagaacaacgacagtgtctccacctacgatcacaacctcaatcttccgacatggagg |
4930206 |
T |
|
| Q |
392 |
gggcaaaacctgaaacctacaacaacaccagatctcggtacacctacaaccaatcagtagaagttgtcaacccaaaccataatcaaatccttgcatcaga |
491 |
Q |
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| T |
4930205 |
gggcaaaacctgaaacctacaacaacaccaaatctcggcacacctacaaccaatcggtaaaagttgtcaacccaaaccataatcaaatccttgcgtcaga |
4930106 |
T |
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| Q |
492 |
tctcaaagcgacgaacaaggaattgccgaagaagaaaaggggatcacaggt |
542 |
Q |
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| T |
4930105 |
tctcaaag-gacgaacaagggactgccgaaaaagaaaaggggatcacaggt |
4930056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 4930603 - 4930471
Alignment:
| Q |
21 |
tggaacatcataaaatcatagggctaccaactcaaccggtttcatatagacgtgtctaaacccagatcgagaaatgagttcaacatgttagcaagcaagc |
120 |
Q |
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| T |
4930603 |
tggaacatcataaaatcatagggctaccaactcaaccggtttcatatagacgtgtctaaacccagatcgagaaatgagttcaacatgttagcaagcaagc |
4930504 |
T |
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| Q |
121 |
agccctttctggttaatagaaccataccctttc |
153 |
Q |
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| T |
4930503 |
agccctttcgggttaatagaaccataccctttc |
4930471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 188
Target Start/End: Complemental strand, 48563254 - 48563189
Alignment:
| Q |
123 |
ccctttctggttaatagaaccataccctttcaagtttacaaaaccgaaccaccgcaaaataggcca |
188 |
Q |
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| T |
48563254 |
ccctttcaggttaatagaaccataccctttcaggtttataaaaccaaaccacatcaaactaggcca |
48563189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 23043316 - 23043249
Alignment:
| Q |
120 |
cagccctttctggttaatagaaccataccctttcaagtttacaaaaccgaaccaccgcaaaataggcca |
188 |
Q |
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| T |
23043316 |
cagccctttcgggttaaga-aaccagaccctttcgagtttacgaaactgaaccacctcaaaataggcca |
23043249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 42871040 - 42870965
Alignment:
| Q |
116 |
caagcagccctttctggttaatagaaccataccctttcaagtttacaaaaccgaaccaccgcaaaataggccacat |
191 |
Q |
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| T |
42871040 |
caagcagcctttccagattaataaaaccataccttttcgagtttaaaaaaccgaaccaccgcaaaagaagccacat |
42870965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 79 - 190
Target Start/End: Complemental strand, 38001888 - 38001781
Alignment:
| Q |
79 |
aacccagatcgagaaatgagttcaacatgttagcaagcaagcagccctttctggttaatagaaccataccctttcaagtttacaaaaccgaaccaccgca |
178 |
Q |
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|||||| |||||| |||||| |||||||||| || ||| ||||||||| || ||||||||| ||||||||||| |||||| | |||||||| ||| |
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| T |
38001888 |
aacccatatcgagggatgagtccaacatgttataaaacaaacagcccttttgggataatagaac-ataccctttcaggtttacga---cgaaccactgca |
38001793 |
T |
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| Q |
179 |
aaataggccaca |
190 |
Q |
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|||||||||||| |
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| T |
38001792 |
aaataggccaca |
38001781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 173
Target Start/End: Complemental strand, 35658073 - 35658031
Alignment:
| Q |
131 |
ggttaatagaaccataccctttcaagtttacaaaaccgaacca |
173 |
Q |
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||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
35658073 |
ggttaatagaaccataccctttcgggtttacaaaaccaaacca |
35658031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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