View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9082_high_2 (Length: 476)
Name: NF9082_high_2
Description: NF9082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9082_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 20 - 461
Target Start/End: Complemental strand, 33889959 - 33889518
Alignment:
| Q |
20 |
ttagggatgcgagaaaatttaattagattatagaaatcacctttttcacagcatcatcaggaacatttgagctgctcttagttaaggatgccgaatgttt |
119 |
Q |
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| T |
33889959 |
ttagggatgcgagaaaatttaattagattatagaaatcacctttttcacaacatcatcaggaacatttgagctgctcttagttaaggatgccgaatgttt |
33889860 |
T |
|
| Q |
120 |
aaatagatttatagcatgttcttctgaaagaggatccaagttgagtggttcgccatatcttcgaattttaaatcttgatgtaaccaaaatcttgtagttt |
219 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33889859 |
aaatagatttatagcatgttcttctgaaagaggacccaagtcgagtggttcgccatatcttcgaattttaaatcttgatgtaaccaaaatcttgtagttt |
33889760 |
T |
|
| Q |
220 |
gggatatcaaacacaaaattgtcaagaaatgattctgatccttgccaaacatcgtctaggacaaacaatattggtcctttcttcacaatttctttcatca |
319 |
Q |
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| T |
33889759 |
gggatatcaaacacaaaattgtcaagaaatgattctgatccttgccaaacatcgtctaggaccaacaatattggtcctttcttcacaatttctttcatca |
33889660 |
T |
|
| Q |
320 |
gatgttccaattgtttaaacgtgtcttcttcgctttgaaaatcaggaactttgtaactattctgtttaaacagtctctccactataacatttagctttgg |
419 |
Q |
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| T |
33889659 |
gatgttccaattggttaaacgtgtcttcttcgctttgaaaatcaggaactttgtaactagtctgtttaaacagtctctccactataacatttagctttgg |
33889560 |
T |
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| Q |
420 |
tgttttcgcaaatgtaatgaagaatatgtttttcttgaattt |
461 |
Q |
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| T |
33889559 |
tgttttcgcaaatgtaatgaagaacatgtttttcttgaattt |
33889518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 50 - 461
Target Start/End: Complemental strand, 33867826 - 33867415
Alignment:
| Q |
50 |
tagaaatcacctttttcacagcatcatcaggaacatttgagctgctcttagttaaggatgccgaatgtttaaatagatttatagcatgttcttctgaaag |
149 |
Q |
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|||||||||||| ||||||| ||||||||||||||| |||| ||||||||||||||||||| ||||||||||| ||||||||||||||| |||| ||||| |
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| T |
33867826 |
tagaaatcacctctttcacaacatcatcaggaacatctgaggtgctcttagttaaggatgctgaatgtttaaacagatttatagcatgtgcttcagaaag |
33867727 |
T |
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| Q |
150 |
aggatccaagttgagtggttcgccatatcttcgaattttaaatcttgatgtaaccaaaatcttgtagtttgggatatcaaacacaaaattgtcaagaaat |
249 |
Q |
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||| | |||| || ||| | || |||||| |||| |||||||||||| |||||||||||||||||||| || |||||||||||||| |||| || | |
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| T |
33867726 |
aggtttcaagacgaatggatgaccgaatcttccaattgcaaatcttgatgtcaccaaaatcttgtagtttggaatctcaaacacaaaattatcaacaagt |
33867627 |
T |
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| Q |
250 |
gattctgatccttgccaaacatcgtctaggacaaacaatattggtcctttcttcacaatttctttcatcagatgttccaattgtttaaacgtgtcttctt |
349 |
Q |
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|||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| |||||||||||| |||||||||||||||| |
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| T |
33867626 |
gattctgaccctagccaaacatcgtctaggactaacaatattggtcctttcttcacaacttgtttcatcaaatgttccaattggttaaacgtgtcttctt |
33867527 |
T |
|
| Q |
350 |
cgctttgaaaatcaggaactttgtaactattctgtttaaacagtctctccactataacatttagctttggtgttttcgcaaatgtaatgaagaatatgtt |
449 |
Q |
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|| |||||||||| ||||| | ||||| | | |||| | |||| ||| ||||||| ||| |||||||||||||| ||||| ||||||||||| || || |
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| T |
33867526 |
cgttttgaaaatccggaacatagtaaccagtgtgttgatacagcttctgcactatagtattcagctttggtgtttttgcaaaggtaatgaagaaaatatt |
33867427 |
T |
|
| Q |
450 |
tttcttgaattt |
461 |
Q |
| |
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|| |||||||| |
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| T |
33867426 |
ttcattgaattt |
33867415 |
T |
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