View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9082_high_5 (Length: 254)

Name: NF9082_high_5
Description: NF9082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9082_high_5
NF9082_high_5
[»] chr6 (4 HSPs)
chr6 (160-238)||(8991046-8991124)
chr6 (160-238)||(9015493-9015571)
chr6 (13-62)||(8990903-8990952)
chr6 (13-62)||(9015350-9015399)
[»] chr4 (1 HSPs)
chr4 (160-201)||(50506527-50506568)
[»] chr1 (1 HSPs)
chr1 (169-202)||(35529282-35529315)
[»] chr2 (1 HSPs)
chr2 (163-207)||(31922178-31922222)


Alignment Details
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 160 - 238
Target Start/End: Original strand, 8991046 - 8991124
Alignment:
Q  160 gtccaagaggttgtctcaagaaagagttgttcaaataacattcatcctctcaataaggcgaagattggtatgtgcattc 238  Q
    |||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  8991046 gtccaagaggctgtctcaagaaagggttgttcaaataacattcctcctctcaataaggcggagattggtatgtgcattc 8991124  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 160 - 238
Target Start/End: Original strand, 9015493 - 9015571
Alignment:
Q  160 gtccaagaggttgtctcaagaaagagttgttcaaataacattcatcctctcaataaggcgaagattggtatgtgcattc 238  Q
    |||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  9015493 gtccaagaggctgtctcaagaaagggttgttcaaataacattcctcctctcaataaggcggagattggtatgtgcattc 9015571  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 8990903 - 8990952
Alignment:
Q  13 ttggtgttcaaaggtgatatagaccgatatacctgagaagattgagagag 62  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  8990903 ttggtgtccaaaggtggtatagaccgatatacctgagaagattgagagag 8990952  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 9015350 - 9015399
Alignment:
Q  13 ttggtgttcaaaggtgatatagaccgatatacctgagaagattgagagag 62  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  9015350 ttggtgtccaaaggtggtatagaccgatatacctgagaagattgagagag 9015399  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 50506527 - 50506568
Alignment:
Q  160 gtccaagaggttgtctcaagaaagagttgttcaaataacatt 201  Q
    |||||| |||||||| ||||||| ||||||||||||||||||    
T  50506527 gtccaaaaggttgtcacaagaaatagttgttcaaataacatt 50506568  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 35529315 - 35529282
Alignment:
Q  169 gttgtctcaagaaagagttgttcaaataacattc 202  Q
    |||||| |||||||||||||||||||||||||||    
T  35529315 gttgtcccaagaaagagttgttcaaataacattc 35529282  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 31922222 - 31922178
Alignment:
Q  163 caagaggttgtctcaagaaagagttgttcaaataacattcatcct 207  Q
    ||||| ||||||  |||||||||||||||||||||||||| ||||    
T  31922222 caagaagttgtccaaagaaagagttgttcaaataacattcctcct 31922178  T

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