View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9082_high_6 (Length: 203)
Name: NF9082_high_6
Description: NF9082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9082_high_6 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 36908087 - 36907885
Alignment:
| Q |
1 |
agatgaaatggtgtttgcttggaaaacgggggatgaagaagaacatccaattctcattccctccatgcgtagaaattgggtatagaagcttacgttcaga |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36908087 |
agatgaaatggtgtttgcttggaaaatgggggatgaagaagaacatccaattctcattccctccatgcgtagaaattgggtatagaagcttacgttcaga |
36907988 |
T |
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| Q |
101 |
tgcagcattagaagccatagctaaagcttcagaagacaaagttcccaacattgttctctacaattacccttcattttctggagctttctcttctctctct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36907987 |
tgcagcattagaagccatagctaaagcttcagaagacaaagttcccaacatagttctctacaattacccttcattttctggagctttctcttctctcttt |
36907888 |
T |
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| Q |
201 |
gct |
203 |
Q |
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||| |
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| T |
36907887 |
gct |
36907885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 22771074 - 22770872
Alignment:
| Q |
1 |
agatgaaatggtgtttgcttggaaaacgggggatgaagaagaacatccaattctcattccctccatgcgtagaaattgggtatagaagcttacgttcaga |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22771074 |
agatgaaatggtgtttgcttggaaaatgggggatgaagaagaacatccaattctcattccctccatgcgtagaaattgggtatagaagcttacgttcaga |
22770975 |
T |
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| Q |
101 |
tgcagcattagaagccatagctaaagcttcagaagacaaagttcccaacattgttctctacaattacccttcattttctggagctttctcttctctctct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
22770974 |
tgcagcattagaagccatagctaaagcttcagaagacaaagttcccaacgtagttctctacaattacccttcattttctggagctttctcttctctcttt |
22770875 |
T |
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| Q |
201 |
gct |
203 |
Q |
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||| |
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| T |
22770874 |
gct |
22770872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 23076866 - 23076664
Alignment:
| Q |
1 |
agatgaaatggtgtttgcttggaaaacgggggatgaagaagaacatccaattctcattccctccatgcgtagaaattgggtatagaagcttacgttcaga |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23076866 |
agatgaaatggtgtttgcttggaaaatgggggatgaagaagaacatccaattctcattccctccatgcgtagaaattgggtatagaagcttacgttcaga |
23076767 |
T |
|
| Q |
101 |
tgcagcattagaagccatagctaaagcttcagaagacaaagttcccaacattgttctctacaattacccttcattttctggagctttctcttctctctct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
23076766 |
tgcagcattagaagccatagctaaagcttcagaagacaaagttcccaacgtagttctctacaattacccttcattttctggagctttctcttctctcttt |
23076667 |
T |
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| Q |
201 |
gct |
203 |
Q |
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||| |
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| T |
23076666 |
gct |
23076664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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