View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9082_low_11 (Length: 271)
Name: NF9082_low_11
Description: NF9082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9082_low_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 274683 - 274939
Alignment:
| Q |
1 |
cccactagagcccgaaagtccactctgaaacacaaaattcaaaacataattcatactacttcctcagcaaaacaacagattgaaatatgaaaaggaaact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
274683 |
cccactagagcccgaaagtccactctgaaacacaaaattcaaaacataattcatactacttcctcagaaaaacaacagattgaaatatgaaaaggaaact |
274782 |
T |
|
| Q |
101 |
gtttacactaataataaataatgaatgagtgaatccggctaagaatagcttcagggcactgtactggttaataaacaaaagaaagaccgtaagggcactt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
274783 |
gtttacactaataataaataatgaatgagtgaatccggctaagaatagcttcagggcactgtactggttaataaacaaaagaaagaccgtaagggcactt |
274882 |
T |
|
| Q |
201 |
gctaaataacaaaagttgaagtttttatagaagaacacagtatttaacaattatgtga |
258 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
274883 |
gctaaataacaaaagttgaag-ttttatagaagaacacagtatttaacaattatgtga |
274939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 21204150 - 21204270
Alignment:
| Q |
1 |
cccactagagcccgaaagtccactctgaaacacaaaattcaaaacataattcatactacttcctcagcaaaacaacagattgaaatatgaaaaggaaact |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21204150 |
cccactaggacccgaaagtccactctgaaacacaaaattaaaaattaaattcatactacttcctcatcaaaacaacagattgaaatatgaaaaggaaact |
21204249 |
T |
|
| Q |
101 |
gtttacactaataataaataa |
121 |
Q |
| |
|
||| ||| ||||||| ||||| |
|
|
| T |
21204250 |
gttaacagtaataatcaataa |
21204270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University