View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9082_low_14 (Length: 226)

Name: NF9082_low_14
Description: NF9082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9082_low_14
NF9082_low_14
[»] chr8 (9 HSPs)
chr8 (1-215)||(9922830-9923044)
chr8 (1-206)||(13396617-13396822)
chr8 (1-204)||(41665077-41665280)
chr8 (1-215)||(8300032-8300246)
chr8 (1-206)||(7924615-7924820)
chr8 (1-206)||(32266791-32266996)
chr8 (2-121)||(172333-172452)
chr8 (1-206)||(13879193-13879398)
chr8 (1-218)||(25090616-25090833)
[»] chr7 (10 HSPs)
chr7 (1-215)||(17720864-17721078)
chr7 (1-209)||(47877212-47877420)
chr7 (1-215)||(4937825-4938039)
chr7 (1-209)||(235141-235348)
chr7 (1-215)||(11276945-11277163)
chr7 (1-206)||(29968203-29968408)
chr7 (1-158)||(37919773-37919930)
chr7 (7-82)||(4077510-4077585)
chr7 (15-55)||(27854299-27854339)
chr7 (7-82)||(34231934-34232009)
[»] chr5 (11 HSPs)
chr5 (1-215)||(31641740-31641954)
chr5 (1-209)||(28535378-28535586)
chr5 (1-215)||(35983488-35983702)
chr5 (1-215)||(12825428-12825642)
chr5 (1-215)||(30732011-30732225)
chr5 (1-215)||(42513949-42514163)
chr5 (4-209)||(42928363-42928568)
chr5 (1-206)||(23238613-23238817)
chr5 (1-189)||(27116884-27117072)
chr5 (14-66)||(24408170-24408222)
chr5 (7-82)||(20208549-20208624)
[»] chr1 (5 HSPs)
chr1 (1-215)||(11908802-11909016)
chr1 (1-215)||(6050832-6051046)
chr1 (1-215)||(35541278-35541492)
chr1 (14-66)||(2491454-2491506)
chr1 (26-66)||(22191627-22191667)
[»] scaffold0034 (1 HSPs)
scaffold0034 (1-215)||(105540-105754)
[»] chr4 (12 HSPs)
chr4 (1-215)||(23642288-23642502)
chr4 (2-215)||(19755497-19755710)
chr4 (2-215)||(19784096-19784309)
chr4 (1-215)||(15740450-15740664)
chr4 (1-215)||(47419033-47419247)
chr4 (1-203)||(1828249-1828451)
chr4 (1-122)||(47685685-47685806)
chr4 (1-206)||(48312324-48312528)
chr4 (120-206)||(5789798-5789884)
chr4 (1-206)||(54482865-54483070)
chr4 (88-206)||(2821740-2821858)
chr4 (88-209)||(55725409-55725530)
[»] chr3 (11 HSPs)
chr3 (1-208)||(34332519-34332726)
chr3 (1-215)||(2364506-2364720)
chr3 (1-215)||(10323268-10323482)
chr3 (1-207)||(40930244-40930439)
chr3 (1-215)||(19919926-19920140)
chr3 (1-97)||(7313005-7313101)
chr3 (1-72)||(7032535-7032606)
chr3 (94-206)||(17097583-17097695)
chr3 (7-82)||(26846102-26846177)
chr3 (7-82)||(47537503-47537578)
chr3 (30-80)||(31547629-31547679)
[»] chr6 (8 HSPs)
chr6 (1-207)||(24767134-24767340)
chr6 (1-158)||(2553866-2554023)
chr6 (1-144)||(21168428-21168570)
chr6 (15-206)||(33185678-33185869)
chr6 (71-206)||(15958519-15958654)
chr6 (7-82)||(649896-649971)
chr6 (4-66)||(13937932-13937994)
chr6 (15-55)||(26513967-26514007)
[»] scaffold0472 (1 HSPs)
scaffold0472 (1-206)||(3481-3686)
[»] chr2 (5 HSPs)
chr2 (6-116)||(41207250-41207360)
chr2 (1-206)||(40176897-40177102)
chr2 (4-206)||(28252952-28253154)
chr2 (88-209)||(12645852-12645973)
chr2 (34-191)||(17764680-17764836)
[»] scaffold0179 (2 HSPs)
scaffold0179 (7-82)||(7763-7838)
scaffold0179 (7-82)||(12697-12772)


Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 9922830 - 9923044
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
9922830 gttagtaataaagccctagactcctctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccaccgacatccacccccaaca 9922929  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
9922930 agaacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccattcacacaatggaacatctccacaccaacaatcccgcca 9923029  T
201 aaaatctgtctctgc 215  Q
    |||||||||||||||    
9923030 aaaatctgtctctgc 9923044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 13396617 - 13396822
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||||||| ||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||    
13396617 gttagtaataaaaccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccaccgcaacgcctccccacccacatccacccccaaca 13396716  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
    || |||| |||||||| || |||| |||||| ||| |||||||| ||||||| |||||||| ||||||| |||||||||||| |||||||  || |||||    
13396717 agaacatattcctaactgaaattgatttgttaacattcaagtcaaaaaggcgcctaaaccggtcacacagtggaacatctccgcaccaacgatcacgcca 13396816  T
201 aaaatc 206  Q
    ||||||    
13396817 aaaatc 13396822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 41665280 - 41665077
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||||||| ||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||  ||||||||||||||||    
41665280 gttagtaataaaaccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccaccgcaacacctccccacccacatccacccccaaca 41665181  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
    || |||| |||||||| || |||| | |||| ||| |||||||| ||||||| |||||||| |||||||| ||||||||||  |||||||  || |||||    
41665180 agaacatattcctaactgaaattgatctgttaacattcaagtcaaaaaggcgcctaaaccggtcacacaaaggaacatctctgcaccaacgatcacgcca 41665081  T
201 aaaa 204  Q
    ||||    
41665080 aaaa 41665077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 8300032 - 8300246
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||| ||||||||| |||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |  ||||||||||||| ||    
8300032 gttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgccgacgccacctcaacgcctccccgcccacatccacccccagca 8300131  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
     | |||| |||||||| ||||||| |||||  |||| ||||||| ||||||| ||||||||  |||| |  |||||||||||||||||||| || |||||    
8300132 ggaacatattcctaactgagattgatttgtgaacagacaagtcaaaaaggcgcctaaaccggacacaaagaggaacatctccacaccaacaatcacgcca 8300231  T
201 aaaatctgtctctgc 215  Q
    |||||| || |||||    
8300232 aaaatcagtatctgc 8300246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 7924615 - 7924820
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||| ||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||| ||    
7924615 gttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccacctcaacgcctccccgcccacatccacccccagca 7924714  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
     | |||| |||||||| ||||||| |||||  |||||||||||| |||||||  |||||||  |||| |  || ||||||||||||||||| || ||||     
7924715 ggaacatattcctaactgagattgatttgtgaacagtcaagtcaaaaaggcgcataaaccggacacaaagagggacatctccacaccaacaatcacgccc 7924814  T
201 aaaatc 206  Q
    ||||||    
7924815 aaaatc 7924820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 32266791 - 32266996
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    ||||| |||||||||||| |||| ||||||||||| |||||||| |||||||||| ||||||||||| ||||||||||||||  ||||||||||| ||||    
32266791 gttagcaataaagccctacactcctctaccaactcctcctcccaggcccacaacctcctacgccaccgcaacgcctccccacccacatccaccccgaaca 32266890  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
    || | | ||| ||||| ||||||| |||||  ||| |||||||| |||| ||    |||||  |||||| |||||||||||| |||||||| | ||||||    
32266891 agaaaaagtttctaacggagattgatttgtgaacactcaagtcaaaaagacgctctaaccgagcacacagtggaacatctccgcaccaacaataccgcca 32266990  T
201 aaaatc 206  Q
    ||||||    
32266991 aaaatc 32266996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 121
Target Start/End: Original strand, 172333 - 172452
Alignment:
2 ttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaacaa 101  Q
    ||||||| ||||||||| |||| ||||||||||  |||||||| ||||||||||||||||||||||||||||||||||| |  |||||||||| || ||     
172333 ttagtaacaaagccctacactcctctaccaacttctcctcccaggcccacaaccgcctacgccacctcaacgcctccccgcccacatccaccctcagcag 172432  T
102 gtacatgttcctaacagaga 121  Q
    | |||| |||||||| ||||    
172433 gaacatattcctaactgaga 172452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 13879398 - 13879193
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||||||||||||| |||| |||||||| || ||||||||  |||| ||||| | |||||||  | ||||  ||||||   | |||||||| ||||    
13879398 gttagtaataaagccctacactcctctaccaagtcctcctcccacacccataaccggcgacgccactgccacgctcccccaccatcctccaccccgaaca 13879299  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
    || |||||||||| || | ||||| ||| |  | ||  ||||||||||| || ||||| || |||||||| ||||||   ||||||||||| || |||||    
13879298 agaacatgttcctcaccgtgattgatttatcgatagctaagtcataaagacgcctaaagcgctcacacaacggaacactaccacaccaacaatctcgcca 13879199  T
201 aaaatc 206  Q
    ||||||    
13879198 aaaatc 13879193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 25090616 - 25090833
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||||||||||||| |||| |||||||| |  ||||||||  || | || || | |||||||  | ||||  ||||||   | |||||||||||||    
25090616 gttagtaataaagccctacactcctctaccaatttctcctcccacaccaataaacggcgacgccactgccacgctcccccaccatcctccacccccaaca 25090715  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
    || |||||||||| || | ||||| ||| ||    || |||||| |||| || ||||| || |||||||| ||||||   ||||||||||| || |||||    
25090716 agaacatgttcctcaccgtgattgatttattggtggttaagtcaaaaagtcgcctaaagcgctcacacaacggaacactaccacaccaacaatctcgcca 25090815  T
201 aaaatctgtctctgctcc 218  Q
    |||||| || ||||||||    
25090816 aaaatcagtatctgctcc 25090833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 17720864 - 17721078
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
17720864 gttagtaataaagccntaaactcctctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccaccgacatccacccccaaca 17720963  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
    ||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||    
17720964 agatcatgttcctaacagagattagtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatgaaacatctccacaccaacaatcccacca 17721063  T
201 aaaatctgtctctgc 215  Q
    |||||||||||||||    
17721064 aaaatctgtctctgc 17721078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 47877212 - 47877420
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||||||| ||| | |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  || |||||||||||||    
47877212 gttagtaataaaaccccacactcctctaccaactcttcctcccaagcccacaaccgcctacgccaccgcaacgcctccccacccacgtccacccccaaca 47877311  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
    || |||| |||||||| ||||||| |||||| |||||||||||||||||||||||||| || || |||| |||||||||||| |||||||  || |||||    
47877312 agaacatattcctaactgagattgatttgttaacagtcaagtcataaaggcgactaaaacggtcgcacagtggaacatctccgcaccaacgatcacgcca 47877411  T
201 aaaatctgt 209  Q
    |||||||||    
47877412 aaaatctgt 47877420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 4938039 - 4937825
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||| ||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||| ||    
4938039 gttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccacctcaacgcctccccgcccacatccacccccagca 4937940  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
     | |||| |||||||| ||||||| |||||  |||||||||||| ||||||| ||||||||  |||| |  |||||||||||||||||||| || |||||    
4937939 ggaacatattcctaactgagattgatttgtgaacagtcaagtcaaaaaggcgcctaaaccggacacaaagaggaacatctccacaccaacaatcacgcca 4937840  T
201 aaaatctgtctctgc 215  Q
    |||||| || |||||    
4937839 aaaatcagtatctgc 4937825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 235348 - 235141
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||||||| ||||| |||| |||||||||| |||||||||||||||||| |||  |||||||| ||||||||||||||  || |||||||| ||||    
235348 gttagtaataaaaccctacactcctctaccaacttttcctcccaagcccacaatcgctgacgccaccgcaacgcctccccacccacgtccacccc-aaca 235250  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
    || |||| ||| |||| ||||||| |||||| |||| ||||||||||||||||||||| || ||||||| |||||||||||| |||||||  || |||||    
235249 agaacatattcataactgagattgatttgttaacagccaagtcataaaggcgactaaaacggtcacacagtggaacatctccgcaccaacgatcacgcca 235150  T
201 aaaatctgt 209  Q
    |||||||||    
235149 aaaatctgt 235141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 11277163 - 11276945
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    ||||| |||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||    
11277163 gttagcaataaagccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccaccgcaacgcctccccacccacatccacccccaaca 11277064  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaag----gcgactaaaccgttcacacaatggaacatctccacaccaacactccc 196  Q
    || |||| |||||||| ||||||| |||||  ||| |||||||| ||||     || | ||||||  |||||| |||||||||||| |||||||  || |    
11277063 agaacatattcctaactgagattgatttgtctacattcaagtcaaaaagacgcacgcccaaaccgggcacacagtggaacatctccgcaccaacgatcac 11276964  T
197 gccaaaaatctgtctctgc 215  Q
     ||||||||| || |||||    
11276963 accaaaaatcggtatctgc 11276945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 29968203 - 29968408
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    ||||| |||||||||||| |||| |||||||| || ||||| |||||||| |||| ||||||||||| ||||||||||||||  ||||||||||||||||    
29968203 gttagcaataaagccctacactcctctaccaattcctcctctcaagcccataacctcctacgccaccgcaacgcctccccacccacatccacccccaaca 29968302  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
    || | | ||| ||||| ||||||| |||||  ||| |||||||| |||| |  | ||||||  ||||||||||||||||||| |||||||| | ||||||    
29968303 agaaaaagtttctaacggagattgatttgtgaacactcaagtcaaaaagactcccaaaccgagcacacaatggaacatctccgcaccaacaattccgcca 29968402  T
201 aaaatc 206  Q
    ||||||    
29968403 aaaatc 29968408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 37919773 - 37919930
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||||||| | ||| |||| ||||||||||  ||||||||||||||||||||||||||||||| |||| || ||||||  ||||||||||||||||    
37919773 gttagtaataaaactctacactcctctaccaacttctcctcccaagcccacaaccgcctacgccaccgcaacacccccccacccacatccacccccaaca 37919872  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaa 158  Q
    || |||| || ||||| || |||| ||| || ||| |||||||| ||||||| |||||    
37919873 agaacatatttctaactgaaattgattttttaacattcaagtcaaaaaggcgcctaaa 37919930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 4077510 - 4077585
Alignment:
7 aataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccac 82  Q
    |||||||||||| |||| |||| |  ||||||||||||||||||||||| ||| | |||| || ||||||||||||    
4077510 aataaagccctacactcctctaactcctcttcctcccaagcccacaacctcctcctccacttccacgcctccccac 4077585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 27854339 - 27854299
Alignment:
15 cctaaactcatctaccaactcttcctcccaagcccacaacc 55  Q
    ||||| ||| |||||||||||||||||||||||||||||||    
27854339 cctaagctcctctaccaactcttcctcccaagcccacaacc 27854299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 34231934 - 34232009
Alignment:
7 aataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccac 82  Q
    ||||| |||||| |||| |||| |  ||| |||||||| |||||||||| ||||| |||| |||||||||||||||    
34231934 aataaggccctacactcctctaactcctcctcctcccaggcccacaacctcctactccacttcaacgcctccccac 34232009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 31641740 - 31641954
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||    
31641740 gttagtaataaagccctaaactcctctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccaccgacctccacccccatca 31641839  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||| ||||||||    
31641840 agaacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccggtcacacaaaggaacatttccacaccaacaatcccgcca 31641939  T
201 aaaatctgtctctgc 215  Q
    ||||||||| |||||    
31641940 aaaatctgtatctgc 31641954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 28535586 - 28535378
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
28535586 gttagtaataaagccctaaactcctctaccaactcttcctctcaagcccacaaccacctacgccacctcaacgcctccccaccgacatccacccccaaca 28535487  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
    || |||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| ||||||||    
28535486 agaacatattcctaacagagattggattgttcacagtcaagtcataaaggcgactaaaacggtcacacaaaggaacatctccacaccaacaatcccgcca 28535387  T
201 aaaatctgt 209  Q
    |||||||||    
28535386 aaaatctgt 28535378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 35983702 - 35983488
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    ||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
35983702 gttagtaataaagccctaaactcctctaccaactcctcctcctaagcccacaaccgcctacgccacctcaacgcctccccaccctcatccacccccaaca 35983603  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
    || |||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||  |||||||||||||||| ||| || |||||    
35983602 agaacatattcctaacagagattggtttgttcacagtcaagtcatataggcgactaaaacggtcacacataggaacatctccacacctacaatcacgcca 35983503  T
201 aaaatctgtctctgc 215  Q
    |||||| || |||||    
35983502 aaaatccgtttctgc 35983488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 12825428 - 12825642
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||| ||||||||| |||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||| ||    
12825428 gttagtaacaaagccctacactcctctaccaactcctcatcccaagcccacaaccgcctacgccacctcaacgcctccccgcccacatccacccccagca 12825527  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
     | |||| |||||||| ||||||| |||||  |||||||||||| ||||||| ||||||||  ||||||| ||||||||||||| |||||| || |||||    
12825528 ggaacatattcctaactgagattgatttgtgaacagtcaagtcaaaaaggcgcctaaaccggacacacaaaggaacatctccactccaacaatcacgcca 12825627  T
201 aaaatctgtctctgc 215  Q
    |||||| || |||||    
12825628 aaaatcagtatctgc 12825642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 30732225 - 30732011
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||| ||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||| ||    
30732225 gttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccacctcaacgcctccccgcccacatccacccccagca 30732126  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
     | |||| |||||||| ||||||| |||||   ||||||||||| ||||||| ||||||||  ||||||  |||||||||||||||||||| || |||||    
30732125 ggaacatattcctaactgagattgatttgtgagcagtcaagtcaaaaaggcgtctaaaccggacacacagaggaacatctccacaccaacaatcacgcca 30732026  T
201 aaaatctgtctctgc 215  Q
    |||||| || |||||    
30732025 aaaatcagtatctgc 30732011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 42513949 - 42514163
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||| ||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||  |    
42513949 gttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccacctcaacgcctccccccccacatccacccccagaa 42514048  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
     | |||| |||||||| ||||||| |||||  |||||||||||| ||||||| ||||||||  |||| |  |||||||||||||||||||| || |||||    
42514049 ggaacatattcctaactgagattgatttgtgaacagtcaagtcaaaaaggcgcctaaaccggacacaaagaggaacatctccacaccaacaatcacgcca 42514148  T
201 aaaatctgtctctgc 215  Q
     ||||| || |||||    
42514149 gaaatcagtatctgc 42514163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 209
Target Start/End: Original strand, 42928363 - 42928568
Alignment:
4 agtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaacaagt 103  Q
    ||||||||| ||||| |||| |||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||  |||||| || ||||||||     
42928363 agtaataaaaccctacactcctctaccaactcttcctcccaagcccacaaccgccgacgccactgcaacgcctccccacccacatccgcctccaacaaga 42928462  T
104 acatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgccaaaa 203  Q
    |||| |||||||| | ||||| ||| || |||| ||||||||| ||||||||||| || ||||||   |||||||| || |||||||| || ||| ||||    
42928463 acatattcctaactgtgattgatttattaacagccaagtcatataggcgactaaaacggtcacacctcggaacatcaccgcaccaacaatcacgctaaaa 42928562  T
204 atctgt 209  Q
    ||||||    
42928563 atctgt 42928568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 23238613 - 23238817
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    ||||| |||||||||||| |||| ||||||||||| |||||||  |||||||||| ||||||||||| ||||||||||||||  | ||||| ||| ||||    
23238613 gttagcaataaagccctacactcctctaccaactcctcctccctggcccacaacctcctacgccaccgcaacgcctccccacccaaatcca-ccctaaca 23238711  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
    || |||| |||||||| ||||||| |||||  ||| |||||||| |||| || | ||||||  |||||| |||||||||||| |||||||  || |||||    
23238712 agaacatattcctaacggagattgatttgtgtacactcaagtcaaaaagacgcccaaaccgggcacacagtggaacatctccgcaccaacgatcacgcca 23238811  T
201 aaaatc 206  Q
    ||||||    
23238812 aaaatc 23238817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 27117072 - 27116884
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||| ||||||||| |||| ||||||||| | |||||||| |||||||||||||||||||||||||||||||| || |  ||||||||||||| ||    
27117072 gttagtaacaaagccctacactcctctaccaacccctcctcccaggcccacaaccgcctacgccacctcaacgcctctccgcccacatccacccccagca 27116973  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaa 189  Q
     | |||| |||||||| |||| || ||  |  |||| ||||||| ||||||| ||||||||  ||||||| ||||||||||||| ||||    
27116972 ggaacatattcctaactgagactgattgatgaacagacaagtcaaaaaggcgcctaaaccggacacacaaaggaacatctccacgccaa 27116884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 24408170 - 24408222
Alignment:
14 ccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccac 66  Q
    ||||| |||| ||||||||||||||||||||||||||||| || | |||||||    
24408170 ccctacactcctctaccaactcttcctcccaagcccacaagcgacgacgccac 24408222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 20208624 - 20208549
Alignment:
7 aataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccac 82  Q
    |||||||||||| |||| |||| |  ||| |||||||| |||||||||| ||| | ||||||| ||||||||||||    
20208624 aataaagccctacactcctctaactcctcctcctcccatgcccacaacctcctcctccacctccacgcctccccac 20208549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 1e-58; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 11909016 - 11908802
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||| ||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||| ||    
11909016 gttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccacctcaacgcctccccgcccacatccacccccatca 11908917  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
     | |||| |||||||| ||||||| |||||  |||||||||||| ||||||| ||||||||  ||||||| |||||||||||||||||||| || || ||    
11908916 tgaacatattcctaactgagattgatttgtgaacagtcaagtcaaaaaggcgcctaaaccggacacacaaaggaacatctccacaccaacaatcacgtca 11908817  T
201 aaaatctgtctctgc 215  Q
    |||||| || |||||    
11908816 aaaatcagtatctgc 11908802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 6050832 - 6051046
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||| ||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||| ||    
6050832 gttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccacctcaacgcctccccgcccacatccacccccagca 6050931  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
     | |||| |||||||| ||||||| |||||  |||||||||||| ||||||| ||||||||  |||| |  |||||||||||||||||||| || |||||    
6050932 ggaacatattcctaactgagattgatttgtgaacagtcaagtcaaaaaggcgcctaaaccggacacaaagaggaacatctccacaccaacaatcacgcca 6051031  T
201 aaaatctgtctctgc 215  Q
    |||||| || |||||    
6051032 aaaatcagtatctgc 6051046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 35541278 - 35541492
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||| ||||||||| |||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |  ||||||||||||| ||    
35541278 gttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgccgacgccacctcaacgcctccccgcccacatccacccccagca 35541377  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
     | |||| |||||||| ||||||| |||||  |||| ||||||| ||||||| ||||||||  |||| |  |||||||||||||||||||| || |||||    
35541378 ggaacatattcctaactgagattgatttgtgaacagacaagtcaaaaaggcgcctaaaccggacacaaagaggaacatctccacaccaacaatcacgcca 35541477  T
201 aaaatctgtctctgc 215  Q
    |||||| || |||||    
35541478 aaaatcagtatctgc 35541492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 2491454 - 2491506
Alignment:
14 ccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccac 66  Q
    ||||| |||| ||||||||||||||||||||||||||||| || | |||||||    
2491454 ccctacactcctctaccaactcttcctcccaagcccacaaacgacgacgccac 2491506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 22191667 - 22191627
Alignment:
26 ctaccaactcttcctcccaagcccacaaccgcctacgccac 66  Q
    |||||||||| |||||||| |||||||||||||||||||||    
22191667 ctaccaactcctcctcccatgcccacaaccgcctacgccac 22191627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 105754 - 105540
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||| ||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||| ||    
105754 gttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccacctcaacgcctccccgcccacatccacccccagca 105655  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
     | |||| |||||||| ||||||| |||||  |||||||||||| ||||||| ||||||||  |||| |  |||||||||||||||||||| || |||||    
105654 ggaacatattcctaactgagattgatttgtgaacagtcaagtcaaaaaggcgcctaaaccggacacaaagaggaacatctccacaccaacaatcacgcca 105555  T
201 aaaatctgtctctgc 215  Q
    |||||| || |||||    
105554 aaaatcagtatctgc 105540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 23642502 - 23642288
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||| ||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||| ||    
23642502 gttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccacctcaacgcctccccgcccacatccacccccagca 23642403  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
     | |||| |||||||| ||||||| |||||  |||||||||||| ||||||| ||||||||  |||| |  |||||||||||||||||||| || |||||    
23642402 ggaacatattcctaactgagattgatttgtgaacagtcaagtcaaaaaggcgcctaaaccggacacaaagaggaacatctccacaccaacaatcacgcca 23642303  T
201 aaaatctgtctctgc 215  Q
    |||||| || |||||    
23642302 aaaatcagtatctgc 23642288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 2 - 215
Target Start/End: Original strand, 19755497 - 19755710
Alignment:
2 ttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaacaa 101  Q
    ||||||||||| ||||| |||| ||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||    
19755497 ttagtaataaaaccctacactcctctaccaactcctcctcctaagcccacaaccgcctacgccaccgcaacgcctccccacccacatccacccccaacaa 19755596  T
102 gtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgccaa 201  Q
    | |||| |||||||  || |||| |||||| ||| |||||||| ||||||| |||||||| ||||||| |||||||||||| |||||||  || ||||||    
19755597 gaacatattcctaaatgaaattgatttgttaacattcaagtcaaaaaggcgcctaaaccggtcacacagtggaacatctccgcaccaacgatcacgccaa 19755696  T
202 aaatctgtctctgc 215  Q
    ||||| || |||||    
19755697 aaatcggtgtctgc 19755710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 2 - 215
Target Start/End: Complemental strand, 19784309 - 19784096
Alignment:
2 ttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaacaa 101  Q
    ||||||||||| ||||| |||| ||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||    
19784309 ttagtaataaaaccctacactcctctaccaactcctcctcctaagcccacaaccgcctacgccaccgcaacgcctccccacccacatccacccccaacaa 19784210  T
102 gtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgccaa 201  Q
    | |||| |||||||  || |||| |||||| ||| |||||||| ||||||| |||||||| ||||||| |||||||||||| |||||||  || ||||||    
19784209 gaacatattcctaaatgaaattgatttgttaacattcaagtcaaaaaggcgcctaaaccggtcacacagtggaacatctccgcaccaacgatcacgccaa 19784110  T
202 aaatctgtctctgc 215  Q
    ||||| || |||||    
19784109 aaatcggtgtctgc 19784096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 15740450 - 15740664
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| |||||  |||||||||||| |  || || ||||||||||    
15740450 gttagtaataaagccctacactcctctaccaactcctcctcccaagcccacaaccgcctatgccactgcaacgcctcccctcccacgtctacccccaaca 15740549  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
    || | || |||||||||||||||| |||||  ||| |||||||| |||| || | ||||||  |||||| |||||||||||| |||||||  || |||||    
15740550 agaatatattcctaacagagattgatttgtgaacattcaagtcaaaaagacgcccaaaccgggcacacagtggaacatctccgcaccaacgatcacgcca 15740649  T
201 aaaatctgtctctgc 215  Q
    |||||| || |||||    
15740650 aaaatcagtatctgc 15740664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 47419033 - 47419247
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||| ||||||||| |||| ||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||| |  ||||||||||||| ||    
47419033 gttagtaacaaagccctacactcctctaccacctcctcctcccaagcccacaaccgcctacgccaccgcaacgcctccccgcccacatccacccccagca 47419132  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
     | |||| |||||||| |||||||  ||||  |||| |||| || |||||||   ||||||  |||| |  |||||||||||||||||||| || |||||    
47419133 ggaacatattcctaactgagattgaattgtgaacagacaagccaaaaaggcgcggaaaccggacacaaagaggaacatctccacaccaacaatcacgcca 47419232  T
201 aaaatctgtctctgc 215  Q
    |||||| || |||||    
47419233 aaaatcagtatctgc 47419247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 1828451 - 1828249
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||||||||||||  |||| ||||||||||| |||||||||||||||||||||||| |||||| |||||||||||| |  || || ||||||||||    
1828451 gttagtaataaagccctccactcctctaccaactcctcctcccaagcccacaaccgcctatgccaccacaacgcctcccctcccacgtctacccccaaca 1828352  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
    || |||| |||||||||||||| | |||||  | | |||||||| |||| || | ||||||  ||||||  ||| ||||||| |||||||  || |||||    
1828351 agaacatattcctaacagagatagatttgtgaatactcaagtcaaaaagacgcccaaaccgggcacacaggggagcatctccgcaccaacgatcacgcca 1828252  T
201 aaa 203  Q
    |||    
1828251 aaa 1828249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 47685806 - 47685685
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||| ||||||||| |||| ||||||||||| |||||||||||||||| ||||| |||||||||||| |||||||| |  ||||||||||||||||    
47685806 gttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacagccgcccacgccacctcaatgcctccccgcccacatccacccccaaca 47685707  T
101 agtacatgttcctaacagagat 122  Q
    || |||| |||||||| |||||    
47685706 agaacatattcctaactgagat 47685685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 48312324 - 48312528
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||||||||||||| |||| |||||||| || ||||| ||  || | ||||| | |||||||  | ||||| ||||||   | |||||||||||||    
48312324 gttagtaataaagccctacactcctctaccaagtcctcctcacacaccaataaccggcgacgccactgccacgcccccccaccatcctccacccccaaca 48312423  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
    || |||||||||| || | ||||| ||| || |  |  ||||||||||| || ||||| || |||||||| |||||||  ||||||||||| || |||||    
48312424 agaacatgttcctcaccgtgattgatttattgatggctaagtcataaagtcgcctaaagcgctcacacaacggaacat-accacaccaacaatctcgcca 48312522  T
201 aaaatc 206  Q
    ||||||    
48312523 aaaatc 48312528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 206
Target Start/End: Complemental strand, 5789884 - 5789798
Alignment:
120 gattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgccaaaaatc 206  Q
    |||||| ||||| |||| ||||||||| ||||| ||||| ||  ||||||| ||||||| |||||||||||| || |||||||||||    
5789884 gattggcttgttgacagccaagtcatataggcgtctaaaacgcacacacaacggaacatttccacaccaacaatcacgccaaaaatc 5789798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 54483070 - 54482865
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||||||| ||||| |||| |||||||| || ||||||||  |||| ||||| | |||||||  | ||||  ||||||   | |||||||||||||    
54483070 gttagtaataaacccctacactcctctaccaaatcctcctcccacacccataaccggcgacgccactgccacgctcccccaccatcctccacccccaaca 54482971  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
    || |||||||||| || |  |||| ||| || |  |  |||||||||||  | ||||| || |||||||| ||||||   ||||||||||| || |||||    
54482970 agaacatgttcctcaccgtaattgatttattgatggctaagtcataaagatgcctaaagcgctcacacaagggaacactaccacaccaacaatctcgcca 54482871  T
201 aaaatc 206  Q
    ||||||    
54482870 aaaatc 54482865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 206
Target Start/End: Complemental strand, 2821858 - 2821740
Alignment:
88 tccacccccaacaagtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacacc 187  Q
    ||||||||||||||| |||||||||| || | ||||| ||| || |  |  ||||||||||| || ||||| || |||||||| ||||||   |||||||    
2821858 tccacccccaacaagaacatgttccttaccgtgattgctttattgatggctaagtcataaagacgcctaaagcgctcacacaacggaacactaccacacc 2821759  T
188 aacactcccgccaaaaatc 206  Q
    |||| || |||||||||||    
2821758 aacaatctcgccaaaaatc 2821740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 209
Target Start/End: Complemental strand, 55725530 - 55725409
Alignment:
88 tccacccccaacaagtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacacc 187  Q
    ||||||||||||||| |||||||||| || | ||||  ||| || ||||  |||||||| || || ||||| || | |||||| ||||||   |||||||    
55725530 tccacccccaacaagaacatgttccttactgtgattactttattgacagctaagtcatatagtcgcctaaagcgcttacacaaaggaacactaccacacc 55725431  T
188 aacactcccgccaaaaatctgt 209  Q
    |||| || ||||||||||||||    
55725430 aacaatctcgccaaaaatctgt 55725409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 34332726 - 34332519
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||||||| ||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||  |  |||||||||||||    
34332726 gttagtaataaaaccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccaccgcaacgcctccccacccatgtccacccccaaca 34332627  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
    || |||| |||||||| ||||||| |||| | ||| |||||||| ||||||| ||||||||  |||||| |||||||| |||||||||||  || |||||    
34332626 agaacatattcctaactgagattgatttgataacattcaagtcaaaaaggcgcctaaaccggacacacagtggaacatttccacaccaacgatcacgcca 34332527  T
201 aaaatctg 208  Q
    ||||||||    
34332526 aaaatctg 34332519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 2364506 - 2364720
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||| ||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||| ||    
2364506 gttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccacctcaacgcctccccgcccacatccacccccagca 2364605  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
     | |||| |||||||| ||||||| |||||  |||||||||||| ||||||| ||||||||  |||| |  |||||||| ||||||||||| || |||||    
2364606 ggaacatattcctaactgagattgatttgtgaacagtcaagtcaaaaaggcgcctaaaccggacacaaagaggaacatcaccacaccaacaatcacgcca 2364705  T
201 aaaatctgtctctgc 215  Q
    |||||| || |||||    
2364706 aaaatcagtatctgc 2364720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 10323482 - 10323268
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||| ||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |  ||||||||||||| ||    
10323482 gttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccaccgcaacgcctccccgcccacatccacccccagca 10323383  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
     | |||| |||||||| |||||||  ||||  |||| |||| || |||||||   ||||||  |||| |  |||||||||||||||||||| || |||||    
10323382 ggaacatattcctaactgagattgaattgtgaacagacaagccaaaaaggcgcggaaaccggacacaaagaggaacatctccacaccaacaatcacgcca 10323283  T
201 aaaatctgtctctgc 215  Q
    |||||| || |||||    
10323282 aaaatcagtatctgc 10323268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 40930439 - 40930244
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccaccccc-aac 99  Q
    |||||||||||| ||||| |||| ||||||||||||||||||||||||||| |||||            |||||||||||||  |||||||||||| |||    
40930439 gttagtaataaaaccctacactcctctaccaactcttcctcccaagcccaccaccgc------------aacgcctccccacccacatccaccccccaac 40930352  T
100 aagtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcc 199  Q
    ||| |||| |||||||||||||||| ||||||||||| ||||||||||||||||||||| || |||||||||||||||| | | |||||||| ||  |||    
40930351 aagaacatattcctaacagagattgatttgttcacagccaagtcataaaggcgactaaaacggtcacacaatggaacatatacgcaccaacaatcatgcc 40930252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 19920140 - 19919926
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||| ||||||||| |||| ||||||||||| ||||||||||||||||||| |||||| |||||||| |||||||| |  ||||||||||||| ||    
19920140 gttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaacctcctacgacacctcaatgcctccccgcccacatccacccccagca 19920041  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
       |||| |||||||| ||||| | |||||  |||||||||||| |||||||   ||| ||  ||||||||||| || |||||||||| || || |||||    
19920040 gaaacatattcctaactgagatagatttgtgaacagtcaagtcaaaaaggcgcggaaatcggacacacaatggatcagctccacaccagcaatcacgcca 19919941  T
201 aaaatctgtctctgc 215  Q
    |||||| || |||||    
19919940 aaaatcagtatctgc 19919926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 7313005 - 7313101
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccaccccca 97  Q
    |||||||| ||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||    
7313005 gttagtaacaaagccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccacctcaacgcctccccgcccacatccaccccca 7313101  T

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Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 7032535 - 7032606
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaac 72  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||    
7032535 gttagtaataaagccctaaactcctctaccaactcttcctcccaagcccacaaacgcctacgccaccgcaac 7032606  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 206
Target Start/End: Complemental strand, 17097695 - 17097583
Alignment:
94 cccaacaagtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacact 193  Q
    ||||||||| |||||||||| || | || |  |||||| |||| ||| ||||| || || ||||| || |||||||| |||||||  ||||||||||| |    
17097695 cccaacaagaacatgttccttaccgtgactactttgttgacagccaaatcatatagccgtctaaaacgctcacacaacggaacattaccacaccaacaat 17097596  T
194 cccgccaaaaatc 206  Q
    | |||||||||||    
17097595 cacgccaaaaatc 17097583  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 26846102 - 26846177
Alignment:
7 aataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccac 82  Q
    |||||||||||| |||| |||| |  ||| |||||||| |||||||||| ||| | ||||||| ||||||||||||    
26846102 aataaagccctacactcctctaactcctcctcctcccatgcccacaacctcctcccccacctccacgcctccccac 26846177  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 47537503 - 47537578
Alignment:
7 aataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccac 82  Q
    |||||||||||| |||| |||| |  ||| ||||||||||||||||||| ||| | |||| || ||||||||||||    
47537503 aataaagccctacactcctctaactcctcctcctcccaagcccacaacctcctcctccacttccacgcctccccac 47537578  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 31547629 - 31547679
Alignment:
30 caactcttcctcccaagcccacaaccgcctacgccacctcaacgcctcccc 80  Q
    |||||| |||||||| |||||||||||||||||||||  | ||||||||||    
31547629 caactcctcctcccatgcccacaaccgcctacgccactgccacgcctcccc 31547679  T

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Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 24767340 - 24767134
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||||| | ||||| |||| |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||  || ||||| |||||||    
24767340 gttagtaatacaaccctacactcctctaccaactcttcctcccaagcccacaaccgtcgacgccaccgcaacgcctccccacccacgtccacgcccaaca 24767241  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
    || |||| |||||||| | ||||| |||||| |||| ||||||||| ||||||||||| || ||||||| ||||||||| || |||||||  || |||||    
24767240 agaacatattcctaactgtgattgatttgttaacagccaagtcatataggcgactaaaacggtcacacagtggaacatcaccgcaccaacgatcacgcca 24767141  T
201 aaaatct 207  Q
    |||||||    
24767140 aaaatct 24767134  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 2553866 - 2554023
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||||||||||||| |||| | ||||||||  | ||||||||||||||||||||||||||||| |||||| |||||||  || |||||||||||||    
2553866 gttagtaataaagccctacactcctttaccaacttctactcccaagcccacaaccgcctacgccaccgcaacgcttccccacccacgtccacccccaaca 2553965  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaa 158  Q
    || |||| ||||||||  |||||| |||||  ||| |||||||| ||||||| |||||    
2553966 agaacatattcctaactaagattgatttgtgaacattcaagtcaaaaaggcgcctaaa 2554023  T

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Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 21168428 - 21168570
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |  || || | ||| ||||    
21168428 gttagtaataaagccctacactcctctaccaactcctcctcccaagcccacaaccgcctacgccaccgcaacgcctcccctcccacgtcta-ccctaaca 21168526  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtca 144  Q
    || |||| |||||||||||||||| |||||  ||| ||||||||    
21168527 agaacatattcctaacagagattgatttgtgaacattcaagtca 21168570  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 33185678 - 33185869
Alignment:
15 cctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaacaagtacatgttccta 114  Q
    |||| |||| |||||||||||||||||||| | |||||| || | ||| |||  | ||||||||||||   | |||   ||||||| |  ||||||||||    
33185678 cctacactcctctaccaactcttcctcccatgtccacaaacggcgacgtcactgccacgcctccccaccatcctcccaacccaacaggagcatgttccta 33185777  T
115 acagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgccaaaaatc 206  Q
    || | ||||  |||||| ||||||||||||||||| |||| | | || ||||  || |||||||| ||||||||||| || |||||||||||    
33185778 accgtgattactttgttgacagtcaagtcataaagacgacgagagcgctcacggaaaggaacatcaccacaccaacaatcacgccaaaaatc 33185869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 206
Target Start/End: Complemental strand, 15958654 - 15958519
Alignment:
71 acgcctccccactgacatccacccccaacaagtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaa 170  Q
    ||||||||||||  ||||||||| ||| |||| |||| | |||||| | ||||  |||||| |||| ||| ||||| || ||||||||  | ||||| ||    
15958654 acgcctccccaccaacatccacctccagcaagaacatatgcctaactgtgattactttgttgacagccaaatcatatagccgactaaagagctcacaaaa 15958555  T
171 tggaacatctccacaccaacactcccgccaaaaatc 206  Q
     |||||||  ||||||||||| || |||||||||||    
15958554 cggaacattaccacaccaacaatcacgccaaaaatc 15958519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 649971 - 649896
Alignment:
7 aataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccac 82  Q
    |||||||||||| |||| |||| |  ||| ||||||||||||||||||| ||| | |||| || ||||||||||||    
649971 aataaagccctacactcctctaactcctcctcctcccaagcccacaacctcctcctccacttccacgcctccccac 649896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 13937932 - 13937994
Alignment:
4 agtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccac 66  Q
    ||||||||  ||||| |||| ||||||||||||||||||||| ||||||| || | |||||||    
13937932 agtaataattccctacactcctctaccaactcttcctcccaaacccacaagcggcgacgccac 13937994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 26513967 - 26514007
Alignment:
15 cctaaactcatctaccaactcttcctcccaagcccacaacc 55  Q
    |||| |||| ||||||||||| |||||||||||||||||||    
26513967 cctacactcctctaccaactcctcctcccaagcccacaacc 26514007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 3481 - 3686
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||||||||||||| |||| ||||||||||| |||||||| |||||||||| ||||||||||| ||||||||||||||  ||||||||||||||||    
3481 gttagtaataaagccctacactcctctaccaactcctcctcccaggcccacaacctcctacgccaccgcaacgcctccccacccacatccacccccaaca 3580  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
    || |||| |||||||| ||||| | |||||  ||| |||||||| |||| || | ||||||  |||||| |||||| ||||| |||||||| || |||||    
3581 agaacatattcctaacggagatagatttgtgtacactcaagtcaaaaagacgcccaaaccgggcacacagtggaacgtctccgcaccaacaatcacgcca 3680  T
201 aaaatc 206  Q
    ||||||    
3681 aaaatc 3686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 41207250 - 41207360
Alignment:
6 taataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaacaagtac 105  Q
    ||||||| ||||| |||| |||||||||||||||||||| ||||||||||| | ||||||   ||||||||||||||  |||||||||||||||||| ||    
41207250 taataaaaccctacactcctctaccaactcttcctcccatgcccacaaccgacgacgccattgcaacgcctccccacccacatccacccccaacaagaac 41207349  T
106 atgttcctaac 116  Q
    || ||||||||    
41207350 atattcctaac 41207360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 40176897 - 40177102
Alignment:
1 gttagtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaaca 100  Q
    |||||||||||||||||| |||| |||||||| || ||||||||  |||| ||||| | |||||||  | ||||  ||||||   | |||||||||||||    
40176897 gttagtaataaagccctacactcctctaccaagtcctcctcccacacccataaccggcgacgccactgccacgctcccccaccatcctccacccccaaca 40176996  T
101 agtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgcca 200  Q
    || |||| ||||| || | ||||| ||| || |  |  ||||||||||| || ||||| ||||||||||| ||||||   ||||||||||| || | |||    
40176997 agaacatcttcctcaccgtgattgatttattgatggctaagtcataaagtcgcctaaagcgttcacacaacggaacactaccacaccaacaatctcacca 40177096  T
201 aaaatc 206  Q
    ||||||    
40177097 aaaatc 40177102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 28252952 - 28253154
Alignment:
4 agtaataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaacaagt 103  Q
    ||||||||||||||| |||| ||||| |  || |||||||| ||||| ||||| | |||||||  | ||||||| ||||  || ||||||||||||||      
28252952 agtaataaagccctacactcctctactaggtcatcctcccatgcccataaccgacgacgccactaccacgcctcaccaccaacctccacccccaacaaaa 28253051  T
104 acatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaacactcccgccaaaa 203  Q
    ||||  ||||||| | ||||  |||||| || | ||| ||||| || || ||||| || ||||  ||  ||||||| ||||||| ||| |||||||||||    
28253052 acatagtcctaaccgtgattactttgttgacggccaaatcatatagccgtctaaagcgctcacgaaacagaacatcaccacaccgacaatcccgccaaaa 28253151  T
204 atc 206  Q
    |||    
28253152 atc 28253154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 209
Target Start/End: Original strand, 12645852 - 12645973
Alignment:
88 tccacccccaacaagtacatgttcctaacagagattggtttgttcacagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacacc 187  Q
    ||||||||||||||| |||||||||| || | ||||  ||| || ||||  |||||||| || || ||||| || |||||||| ||||||   |||||||    
12645852 tccacccccaacaagaacatgttccttactgtgattactttattgacagctaagtcatatagtcgcctaaagcgctcacacaaaggaacactaccacacc 12645951  T
188 aacactcccgccaaaaatctgt 209  Q
    |||| || ||||||||||||||    
12645952 aacaatctcgccaaaaatctgt 12645973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 191
Target Start/End: Complemental strand, 17764836 - 17764680
Alignment:
34 tcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccactgacatccacccccaacaagtacatgttcctaacagagattggtttgttca 133  Q
    ||||||||||| | ||| || || | |||||||  | ||| |||||||| |||||||||||| |||||| |||| |||||||| | | ||  |||||| |    
17764836 tcttcctcccacgtccataagcgacgacgccactgccacgtctccccaccgacatccaccccaaacaagaacatattcctaactgtgctt-atttgttga 17764738  T
134 cagtcaagtcataaaggcgactaaaccgttcacacaatggaacatctccacaccaaca 191  Q
    | | ||| ||||| || || ||||| || ||||| ||||||||||  |||||||||||    
17764737 cggccaaatcatatagtcgtctaaagcgctcacaaaatggaacattaccacaccaaca 17764680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 7763 - 7838
Alignment:
7 aataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccac 82  Q
    |||||||||||| |||| |||| |  ||| |||||||| |||||||||| ||| | ||||||| ||||||||||||    
7763 aataaagccctacactcctctaactcctcctcctcccatgcccacaacctcctcctccacctccacgcctccccac 7838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 12697 - 12772
Alignment:
7 aataaagccctaaactcatctaccaactcttcctcccaagcccacaaccgcctacgccacctcaacgcctccccac 82  Q
    |||||||||||| |||| |||| |  ||| |||||||| |||||||||| ||| | ||||||| ||||||||||||    
12697 aataaagccctacactcctctaactcctcctcctcccatgcccacaacctcctccaccacctccacgcctccccac 12772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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