View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9082_low_6 (Length: 367)
Name: NF9082_low_6
Description: NF9082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9082_low_6 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 13 - 367
Target Start/End: Original strand, 19493512 - 19493866
Alignment:
| Q |
13 |
attattctatcaatggacgttgttcccgattctccatcctttgatgtcgaatccgagggttcactcaactcactaactgtcaacggcacccaactcacag |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19493512 |
attattctatcaatggacgttgttcccgattctccatccttcgatgtcgaatccgagggttcactcaactcactaactgtcaacggcacccaactcacag |
19493611 |
T |
|
| Q |
113 |
ccgagtttaacatttcggtctccggatataacttaaaatcgtattcccgtgtgtattacgatgatgtctctgcggagatcttttacagaggtgaaggtgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19493612 |
ccgagtttaacatttcggtctccggatataacttcaaatcgtattcccgtgtgtattacgatgatgtctctgcggagatcttttacagaggtgaaggtgt |
19493711 |
T |
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| Q |
213 |
cgttctaaccaaatcatctcttccatctttcaccaccgatggaaagagtgagagtgtgattcatttgacgctttccgtgaataagtctgatgatttcggt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19493712 |
cgttctaaccaaatcatctcttccatctttcaccaccgatggaaagagtgagagtgtgattcatttgacgctttccgtgaataagtctgatgatttcggt |
19493811 |
T |
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| Q |
313 |
ggcgctgcgaccggtattgctcggagccgcaaagatggaacggtagaatttgggc |
367 |
Q |
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| T |
19493812 |
ggcgctgcgactggtattgctcggagccgcaaagatggaacggtggaatttgggc |
19493866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 99 - 367
Target Start/End: Complemental strand, 19517719 - 19517457
Alignment:
| Q |
99 |
cacccaactcacagccgagtttaacatttcggtctccggatataacttaaaatcgtattcccgtgtgtattacgatgatgtctctgcggagatcttttac |
198 |
Q |
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| T |
19517719 |
cacccaactcacagccgagttcaacattacggtctctgccgataaccccacagagtattcccgtgtttactacgacgcagtctctgctgagatcttttac |
19517620 |
T |
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| Q |
199 |
agaggtgaaggtgtcgttctaaccaaatcatctcttccatctttcaccaccgatggaaagagtgagagtgtgattcatttgacgctttccgtgaataagt |
298 |
Q |
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||||||||||| | |||||||||||||||||||| |||||||||||||| || |||| ||||||||||||| ||||| | || ||||| ||| |
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| T |
19517619 |
cgaggtgaaggtcttgttctaaccaaatcatctctgtcatctttcaccacccat-aaaag-----gagtgtgattcatatgacgttgtcggtgaacaagc |
19517526 |
T |
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| Q |
299 |
ctgatgatttcggtggcgctgcgaccggtattgctcggagccgcaaagatggaacggtagaatttgggc |
367 |
Q |
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| T |
19517525 |
ctattgattttggtggcgccgcagccagcattgctcagagccgcaaagatggaacggtggagtttgggc |
19517457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 67 - 352
Target Start/End: Original strand, 19501594 - 19501873
Alignment:
| Q |
67 |
gagggttcactcaactcactaactgtcaacggcacccaactcacagccgagtttaacatttcggtctccggatataacttaaaatcgtattcccgtgtgt |
166 |
Q |
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||||||||||||||||||||||| | | | ||||||||||||||||||||| |||||| | ||||| | |||| | | |||||||||||| | |
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| T |
19501594 |
gagggttcactcaactcactaaccattagcaacacccaactcacagccgagttcaacattaccgtctctgtcgataatcccacacagtattcccgtgttt |
19501693 |
T |
|
| Q |
167 |
attacgatgatgtctctgcggagatcttttacagaggtgaaggtgtcgttctaaccaaatcatctcttccatctttcaccaccgatggaaagagtgagag |
266 |
Q |
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||||||| | ||||||||| ||||| ||||| |||||||| || | |||||||||||||||||||||| ||||||||||||| | | || |||| |
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| T |
19501694 |
attacgacgctgtctctgctgagatattttatggaggtgaaagtcttgttctaaccaaatcatctcttctatctttcaccacccacgaaa------agag |
19501787 |
T |
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| Q |
267 |
tgtgattcatttgacgctttccgtgaataagtctgatgatttcggtggcgctgcgaccggtattgctcggagccgcaaagatggaa |
352 |
Q |
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| T |
19501788 |
cgtgattcatatgacgttgtcggtgaacaagccttctgattttggcggcgcggcgaccagcattgctcagagccgcaaagatggaa |
19501873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 58 - 248
Target Start/End: Original strand, 19530498 - 19530688
Alignment:
| Q |
58 |
gtcgaatccgagggttcactcaactcactaactgtcaacggcacccaactcacagccgagtttaacatttcggtctccggatataacttaaaatcgtatt |
157 |
Q |
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||||| |||| |||||||||||||||||||||||| |||||| ||||| || |||||||| | |||||||||||||| | |||||| | | |||| |
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| T |
19530498 |
gtcgactccgtgggttcactcaactcactaactgttaacggcccccaattctcagccgagctcaacatttcggtctcggcctataaccccacagactatt |
19530597 |
T |
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| Q |
158 |
cccgtgtgtattacgatgatgtctctgcggagatcttttacagaggtgaaggtgtcgttctaaccaaatcatctcttccatctttcaccac |
248 |
Q |
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| T |
19530598 |
cttgtgcctattacgaggctgtctctgcggaggtcttttacggaggtgaaggtctggttctaagcaaaacatctctgccatctttcaccac |
19530688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 69 - 262
Target Start/End: Complemental strand, 19125539 - 19125346
Alignment:
| Q |
69 |
gggttcactcaactcactaactgtcaacggcacccaactcacagccgagtttaacatttcggtctccggatataacttaaaatcgtattcccgtgtgtat |
168 |
Q |
| |
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|||| ||||||||||||||||||| |||||||||||| ||||||| ||||| ||||||| |||| || |||||| ||| | ||||| |||| ||| |
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| T |
19125539 |
gggtgcactcaactcactaactgttaacggcacccaaatcacagctgagttcgacatttcagtcttcgcctataaccacaaaacctattctcgtgcctat |
19125440 |
T |
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| Q |
169 |
tacgatgatgtctctgcggagatcttttacagaggtgaaggtgtcgttctaaccaaatcatctcttccatctttcaccaccgatggaaagagtg |
262 |
Q |
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||| | | |||||||| || |||||||| ||||||||||| | ||| ||| || | |||| || ||||||||||||||| || | ||||||| |
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| T |
19125439 |
tacaaggcagtctctgcagatctcttttacggaggtgaaggtctggttttaaacagaacatcactgccatctttcaccacccatagcaagagtg |
19125346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 260
Target Start/End: Original strand, 19495613 - 19495713
Alignment:
| Q |
160 |
cgtgtgtattacgatgatgtctctgcggagatcttttacagaggtgaaggtgtcgttctaaccaaatcatctcttccatctttcaccaccgatggaaaga |
259 |
Q |
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||||| |||||||| | |||||| |||| |||||||||||||||||||| | ||||||| |||| ||||||| ||||||||||||||| || |||||| |
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| T |
19495613 |
cgtgtctattacgacgcagtctctatggaggtcttttacagaggtgaaggtctggttctaaacaaaacatctctgccatctttcaccaccaatagaaaga |
19495712 |
T |
|
| Q |
260 |
g |
260 |
Q |
| |
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| |
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| T |
19495713 |
g |
19495713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 69 - 260
Target Start/End: Original strand, 46536552 - 46536743
Alignment:
| Q |
69 |
gggttcactcaactcactaactgtcaacggcacccaactcacagccgagtttaacatttcggtctccggatataacttaaaatcgtattcccgtgtgtat |
168 |
Q |
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|||||||||||||||||| || || |||||||||||| |||||||| |||| || ||||||||||| | | ||||| | || || ||| ||||| ||| |
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| T |
46536552 |
gggttcactcaactcacttacagttaacggcacccaagtcacagccaagttcaatatttcggtctcggtaaataaccctacatggttttctcgtgtctat |
46536651 |
T |
|
| Q |
169 |
tacgatgatgtctctgcggagatcttttacagaggtgaaggtgtcgttctaaccaaatcatctcttccatctttcaccaccgatggaaagag |
260 |
Q |
| |
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||| | | ||||||| ||| | |||||| ||||||||| | |||| |||| ||||||| || ||||||||||||||| || ||||||| |
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| T |
46536652 |
tacaacgcggtctctgttgaggttttttaccgaggtgaagctctcgtcctaaagaaatcatgtcggccatctttcaccacccatagaaagag |
46536743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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