View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9082_low_8 (Length: 316)
Name: NF9082_low_8
Description: NF9082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9082_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 8 - 300
Target Start/End: Original strand, 17454995 - 17455287
Alignment:
| Q |
8 |
tggacatcaacattgtagaacctgcaaagcatgtaagttttgacatcataccgaagataaaattgttattttaatttttcatttctatatgtacttatgc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
17454995 |
tggacatcaacattgtagaacctgcaaagcatgtaagttttgacatcataccgaagataaaattgttattttattttttcatttctatatgtacttttgc |
17455094 |
T |
|
| Q |
108 |
atgcattaccaaatgannnnnnnnnnnnaggggacattggaagcagctctgcaagttcaaaccttgaagatgatgaaattgatgctgaaatgtacattca |
207 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17455095 |
atgcattaccaaatgatttattttttttaggggacattggaagcagctctgcaggttcaaaccttgaagacgatgaaattgatgctgaaatgtacattca |
17455194 |
T |
|
| Q |
208 |
accgggaaatccacacttcattgcaaaacatagtctttatagacccaatgaattggtataattctttacatcgattctttattaatctcttta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
17455195 |
accgggaaatccacacttcattgcaaaacatagtctttatagacccaatgaattggtataattctttatatcgattctttattaatcgcttta |
17455287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 136 - 275
Target Start/End: Complemental strand, 17393749 - 17393610
Alignment:
| Q |
136 |
aggggacattggaagcagctctgcaagttcaaaccttgaagatgatgaaattgatgctgaaatgtacattcaaccgggaaatccacacttcattgcaaaa |
235 |
Q |
| |
|
|||| ||||||| |||||||||||| | ||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
17393749 |
agggaacattgggagcagctctgcacgatcaaaacttgaagatgacgaaattgatgctgaaatatatattcaaccgggaaatcctcactttattgcaaaa |
17393650 |
T |
|
| Q |
236 |
catagtctttatagacccaatgaattggtataattcttta |
275 |
Q |
| |
|
||| || || ||||| |||||||||||| ||||||||| |
|
|
| T |
17393649 |
tatattcattccagacctaatgaattggtaaaattcttta |
17393610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 17461363 - 17461459
Alignment:
| Q |
142 |
cattggaagcagctctgcaagttcaaaccttgaagatgatgaaattgatgctgaaatgtacattcaaccgggaaatccacacttcattgcaaaacat |
238 |
Q |
| |
|
||||||||| ||||||||| | |||| |||||||||||||||||||||||||||||||| ||||| || ||||||||| ||||| |||||||||| |
|
|
| T |
17461363 |
cattggaagtagctctgcagctccaaatcttgaagatgatgaaattgatgctgaaatgtatattcagccaggaaatccatacttctatgcaaaacat |
17461459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 40235230 - 40235135
Alignment:
| Q |
142 |
cattggaagcagctctgcaagttcaaaccttgaagatgatgaaattgatgctgaaatgtacattcaaccgggaaatccacacttcattgcaaaaca |
237 |
Q |
| |
|
||||||||||||||||||| | |||| | |||||||||||||||||||| ||||||||| ||||| || |||||||| ||||| ||||||||| |
|
|
| T |
40235230 |
cattggaagcagctctgcagctccaaaacatgaagatgatgaaattgatgttgaaatgtatattcagccaggaaatccttacttctatgcaaaaca |
40235135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 40235375 - 40235321
Alignment:
| Q |
11 |
acatcaacattgtagaacctgcaaagcatgtaag-ttttgacatcataccgaaga |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||| ||||| |
|
|
| T |
40235375 |
acatcaacattgtagaacctgcaaagcatgtatgtttttgacatcatactgaaga |
40235321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University