View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9083_high_12 (Length: 416)
Name: NF9083_high_12
Description: NF9083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9083_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 38954659 - 38955061
Alignment:
| Q |
1 |
agtgtatcaacgaatattagtggtggataagtaatggttcctgtggcgtatgttagtatatatccctttgtgtttggtctagtcctgtacaatatacaat |
100 |
Q |
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| T |
38954659 |
agtgtatcaacgaatattagtggtggataagtaatggttcctgtggcgtatgttagtatatatccctttgtgtttggtctagtcctgtacaatatacaat |
38954758 |
T |
|
| Q |
101 |
acaagttctgtgctaaatattttgaggaactagcaacagtgaagaagatttaattagtttaatcaaaggtaaggacaaaaatgtgtacgtgactagaaat |
200 |
Q |
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| T |
38954759 |
acaagttctgtgctaaatattttgaggaactagcaacagtgaagaagatttaattagtttaatcaaaggtaaggacaaaaatgtgtacgtgactagaaat |
38954858 |
T |
|
| Q |
201 |
gagaaagtgtgac-atgccaactttactgccgaaagatgatgggaattagattgagacatttggtggatttaacatatatgattaattcaaagaaaagaa |
299 |
Q |
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| T |
38954859 |
gagaaagtgtgacaatgccaactttactgccgaaagatgatgggaattagattgagacatttggtggatttaacatatatgattaattcaaagaaaagaa |
38954958 |
T |
|
| Q |
300 |
agnnnnnnnnnncgaatttgtttgtttagatgatgaagacaattcaagtatagctaaaatatgcatagctcaatttatgtatatgtactattacacatct |
399 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38954959 |
aggaaaaaaaaacgaatttgtttgtttagatgatgaagacaattcaagtatagctaaaatatgcatagctcaatttatgtatatgtactattatacatct |
38955058 |
T |
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| Q |
400 |
att |
402 |
Q |
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| T |
38955059 |
att |
38955061 |
T |
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