View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9083_high_15 (Length: 374)
Name: NF9083_high_15
Description: NF9083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9083_high_15 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 374
Target Start/End: Complemental strand, 9087057 - 9086701
Alignment:
| Q |
16 |
ctgtgtgtctattataaaccaaaatttatttttcggctgagccatggaaggttggaataatgttacatattgcaggttaacaaagtctaagtctgatcat |
115 |
Q |
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| T |
9087057 |
ctgtgtgtctattataaaccaaaatttatttttcggctgagccatggaaggttggaataattttacatattgcaggttaacaaagtctaagtctgatcat |
9086958 |
T |
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| Q |
116 |
catcctattctattgtatatgactaatgcaatctaatgcttgtgctccataagaagttacagctccgaaatgtggctttgaaaatttggaataaggacnn |
215 |
Q |
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| T |
9086957 |
catcctattctattgtatatgactaatgcaatcttatgcttgtgcttcataagaagttacagctccgaaatgtggctttgaaaatttggattaaggac-- |
9086860 |
T |
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| Q |
216 |
nnnnnnnggagatattaaggctatcagagaggttgattgtgtttaggatctccttgataaacttggcgcaaatgtgcggttaatgcaccaagtataaatc |
315 |
Q |
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| T |
9086859 |
tttttttgaagatattaaggctatcagagaggttgattgtgtttaggagctcattgataaatttggcgaaaatgagcggttaatgcacatagtatagctc |
9086760 |
T |
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| Q |
316 |
aagatttgataaaacaggctttaaattttaaggaccaataatattgcaaagaaaaatcc |
374 |
Q |
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| T |
9086759 |
atgatttgttacaacaagctttacattttaaggatcaataatattgcaaagaaaaatcc |
9086701 |
T |
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