View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9083_high_25 (Length: 289)

Name: NF9083_high_25
Description: NF9083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9083_high_25
NF9083_high_25
[»] chr6 (1 HSPs)
chr6 (12-274)||(17170580-17170837)
[»] chr8 (2 HSPs)
chr8 (104-183)||(40995822-40995901)
chr8 (108-157)||(6108586-6108635)
[»] chr4 (2 HSPs)
chr4 (108-183)||(27756467-27756542)
chr4 (108-183)||(3427863-3427938)
[»] chr1 (2 HSPs)
chr1 (105-183)||(1408616-1408694)
chr1 (108-184)||(4941199-4941275)
[»] chr5 (3 HSPs)
chr5 (105-176)||(19187144-19187215)
chr5 (104-183)||(21067613-21067692)
chr5 (103-170)||(38282507-38282574)
[»] chr2 (1 HSPs)
chr2 (108-183)||(4614283-4614358)


Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 12 - 274
Target Start/End: Original strand, 17170580 - 17170837
Alignment:
Q  12 attattctgtgtaagattttgttgatttggaagtgtaatttgacattatttatttattcgtgttaaccaccggttaagaaaattnnnnnnntgaagtttt 111  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||         || ||||    
T  17170580 attattttgtgtaagattttgttgattgggaagtgtaatttgacattatttatttattcgtgttaaccactggttaaggaaattaaaaaaagaaaatttt 17170679  T
Q  112 ataataaaaataatactttttatgtttttgaagacttaacaacacaaattttaaggtaaaacttactacattacatttgaatccttacccttatttattt 211  Q
    | ||||||||||| ||||||||| ||||| || | ||||||||| ||||| ||| |||||||||||| | ||     |||||||||||||||||||||||    
T  17170680 aaaataaaaataacactttttatatttttaaaaaattaacaacataaattctaatgtaaaacttactgcgtt-----tgaatccttacccttatttattt 17170774  T
Q  212 tgtttgcatgtgatgtgattgatatatttttgtgacaaaaaagtggagtgggacatgtctttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17170775 tgtttgcatgtgatgtgattgatatatttttgtgacaaaaaagtggagtgggacatgtctttt 17170837  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 183
Target Start/End: Original strand, 40995822 - 40995901
Alignment:
Q  104 gaagttttataataaaaataatactttttatgtttttgaagacttaacaacacaaattttaaggtaaaacttactacatt 183  Q
    ||||||||| ||| ||||||| |||||||||||||||||||| || ||||||||||||| || |||| ||||||||||||    
T  40995822 gaagttttaaaatgaaaataacactttttatgtttttgaagagttgacaacacaaatttcaatgtaatacttactacatt 40995901  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 6108635 - 6108586
Alignment:
Q  108 ttttataataaaaataatactttttatgtttttgaagacttaacaacaca 157  Q
    ||||| ||| ||||||||||||||||||||||||| || |||||||||||    
T  6108635 ttttaaaatgaaaataatactttttatgtttttgaggagttaacaacaca 6108586  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 183
Target Start/End: Complemental strand, 27756542 - 27756467
Alignment:
Q  108 ttttataataaaaataatactttttatgtttttgaagacttaacaacacaaattttaaggtaaaacttactacatt 183  Q
    ||||| ||| ||||||| |||||||||| ||||||||| || ||||||||||||| || |||| ||||||||||||    
T  27756542 ttttaaaatgaaaataacactttttatgcttttgaagagttgacaacacaaatttcaatgtaatacttactacatt 27756467  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 183
Target Start/End: Complemental strand, 3427938 - 3427863
Alignment:
Q  108 ttttataataaaaataatactttttatgtttttgaagacttaacaacacaaattttaaggtaaaacttactacatt 183  Q
    ||||| ||| ||||||| |||||||||||||||||||| || ||||||||| ||| ||   || ||||||||||||    
T  3427938 ttttaaaatgaaaataacactttttatgtttttgaagagttgacaacacaagtttcaatacaatacttactacatt 3427863  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 183
Target Start/End: Complemental strand, 1408694 - 1408616
Alignment:
Q  105 aagttttataataaaaataatactttttatgtttttgaagacttaacaacacaaattttaaggtaaaacttactacatt 183  Q
    |||||||| ||| ||||||| |||||||||||||||||||| || ||||||||| ||  || |||||| ||||||||||    
T  1408694 aagttttaaaatgaaaataaaactttttatgtttttgaagagttgacaacacaagttccaatgtaaaaattactacatt 1408616  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 4941199 - 4941275
Alignment:
Q  108 ttttataataaaaataatactttttatgtttttgaagacttaacaacacaaattttaaggtaaaacttactacatta 184  Q
    ||||| ||||||||||| |||||||||| |||||| || || ||||||||| ||| || | || | |||||||||||    
T  4941199 ttttaaaataaaaataacactttttatgcttttgaggagttgacaacacaagtttcaatgcaataattactacatta 4941275  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 176
Target Start/End: Complemental strand, 19187215 - 19187144
Alignment:
Q  105 aagttttataataaaaataatactttttatgtttttgaagacttaacaacacaaattttaaggtaaaactta 176  Q
    |||||||| ||| |||| || |||||||||| ||||||||| || ||||||||||||| || ||||||||||    
T  19187215 aagttttaaaatgaaaacaacactttttatgcttttgaagagttgacaacacaaatttcaatgtaaaactta 19187144  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 21067692 - 21067613
Alignment:
Q  104 gaagttttataataaaaataatactttttatgtttttgaagacttaacaacacaaattttaaggtaaaacttactacatt 183  Q
    ||||||||| ||| ||| || ||||||||||| |||||||||  | ||||||||| ||| || |||| ||||||||||||    
T  21067692 gaagttttaaaatgaaagtactactttttatgcttttgaagagatgacaacacaagtttcaatgtaatacttactacatt 21067613  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 38282574 - 38282507
Alignment:
Q  103 tgaagttttataataaaaataatactttttatgtttttgaagacttaacaacacaaattttaaggtaa 170  Q
    |||| ||||| ||| ||||||| ||||||||| ||||| |||| || |||||||||||||||| ||||    
T  38282574 tgaaattttaaaatgaaaataacactttttatatttttaaagagttgacaacacaaattttaatgtaa 38282507  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 4614283 - 4614358
Alignment:
Q  108 ttttataataaaaataatactttttatgtttttgaagacttaacaacacaaattttaaggtaaaacttactacatt 183  Q
    ||||| ||||||||||  |||||| |||||||||| || || |||||| ||||| ||| |||| ||||||||||||    
T  4614283 ttttaaaataaaaatagcacttttcatgtttttgatgagttgacaacataaattctaatgtaatacttactacatt 4614358  T

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