View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9083_high_28 (Length: 276)

Name: NF9083_high_28
Description: NF9083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9083_high_28
NF9083_high_28
[»] chr7 (36 HSPs)
chr7 (156-260)||(42663271-42663375)
chr7 (18-112)||(42663420-42663514)
chr7 (156-228)||(45256619-45256691)
chr7 (157-227)||(16829573-16829643)
chr7 (156-228)||(22588849-22588921)
chr7 (157-227)||(16954008-16954078)
chr7 (156-230)||(48395353-48395427)
chr7 (44-115)||(48395246-48395317)
chr7 (44-112)||(8352772-8352840)
chr7 (46-112)||(6892638-6892704)
chr7 (46-112)||(48314366-48314432)
chr7 (47-112)||(17909055-17909120)
chr7 (51-112)||(22588966-22589027)
chr7 (161-227)||(7212552-7212618)
chr7 (46-107)||(6427210-6427271)
chr7 (42-83)||(41985123-41985164)
chr7 (45-85)||(6427354-6427394)
chr7 (156-228)||(17908952-17909024)
chr7 (45-85)||(27164869-27164909)
chr7 (76-112)||(34820640-34820676)
chr7 (43-102)||(2849536-2849595)
chr7 (46-85)||(29162311-29162350)
chr7 (45-112)||(40231711-40231777)
chr7 (37-92)||(42552890-42552945)
chr7 (43-97)||(5068643-5068697)
chr7 (42-112)||(12007191-12007261)
chr7 (50-112)||(47925341-47925403)
chr7 (44-85)||(30864449-30864490)
chr7 (44-73)||(35005141-35005170)
chr7 (44-85)||(38344758-38344799)
chr7 (44-112)||(27704433-27704500)
chr7 (44-84)||(31274562-31274602)
chr7 (44-84)||(37392041-37392081)
chr7 (44-84)||(44187689-44187729)
chr7 (44-112)||(47448824-47448892)
chr7 (44-112)||(48639389-48639456)
[»] chr3 (33 HSPs)
chr3 (157-228)||(9326873-9326944)
chr3 (46-112)||(9326990-9327056)
chr3 (45-112)||(41448181-41448248)
chr3 (156-230)||(11225016-11225090)
chr3 (43-112)||(47187525-47187594)
chr3 (43-112)||(19623257-19623326)
chr3 (44-112)||(31143268-31143336)
chr3 (44-112)||(39901589-39901657)
chr3 (48-107)||(41850945-41851004)
chr3 (43-112)||(48405407-48405476)
chr3 (44-85)||(52454126-52454167)
chr3 (45-85)||(34021495-34021535)
chr3 (156-228)||(37073769-37073841)
chr3 (46-105)||(5393846-5393905)
chr3 (45-112)||(19150324-19150391)
chr3 (43-106)||(23377979-23378042)
chr3 (46-97)||(39284687-39284738)
chr3 (58-112)||(6976942-6976996)
chr3 (45-91)||(21306024-21306070)
chr3 (44-102)||(38017942-38018000)
chr3 (44-85)||(7246-7287)
chr3 (45-82)||(3958053-3958090)
chr3 (43-84)||(35074123-35074164)
chr3 (44-85)||(36818954-36818995)
chr3 (43-84)||(46473125-46473166)
chr3 (43-84)||(53102935-53102976)
chr3 (44-85)||(53473608-53473649)
chr3 (43-83)||(3069608-3069648)
chr3 (44-84)||(27198193-27198233)
chr3 (45-85)||(32931950-32931990)
chr3 (44-84)||(38359339-38359379)
chr3 (44-84)||(49361857-49361897)
chr3 (44-112)||(50559217-50559285)
[»] chr1 (31 HSPs)
chr1 (160-227)||(17777346-17777413)
chr1 (156-228)||(3904293-3904365)
chr1 (43-112)||(35883612-35883681)
chr1 (156-221)||(1523187-1523252)
chr1 (156-221)||(2279218-2279283)
chr1 (47-115)||(1922427-1922495)
chr1 (46-112)||(3672341-3672406)
chr1 (43-97)||(33694221-33694275)
chr1 (47-109)||(40809498-40809559)
chr1 (44-112)||(4466693-4466760)
chr1 (44-92)||(38520018-38520066)
chr1 (46-85)||(29362724-29362763)
chr1 (44-94)||(12021958-12022008)
chr1 (42-92)||(17526415-17526465)
chr1 (46-84)||(40238438-40238476)
chr1 (46-84)||(50528090-50528128)
chr1 (47-112)||(1523299-1523364)
chr1 (47-84)||(3558847-3558884)
chr1 (47-112)||(5574265-5574329)
chr1 (44-85)||(9987949-9987990)
chr1 (43-112)||(11947792-11947861)
chr1 (43-112)||(35369697-35369765)
chr1 (43-72)||(36669415-36669444)
chr1 (37-85)||(6829815-6829863)
chr1 (49-85)||(25130706-25130742)
chr1 (44-112)||(30535989-30536057)
chr1 (44-88)||(42577470-42577514)
chr1 (44-84)||(44672063-44672103)
chr1 (44-112)||(48858821-48858889)
chr1 (44-112)||(48872377-48872444)
chr1 (44-112)||(48983673-48983741)
[»] chr5 (27 HSPs)
chr5 (156-229)||(844144-844217)
chr5 (156-227)||(43057546-43057617)
chr5 (156-224)||(6968604-6968672)
chr5 (156-227)||(34270226-34270297)
chr5 (43-112)||(11148508-11148577)
chr5 (46-102)||(8728596-8728652)
chr5 (46-112)||(26754643-26754709)
chr5 (46-112)||(41621933-41621999)
chr5 (45-115)||(43057434-43057504)
chr5 (43-112)||(30838370-30838439)
chr5 (46-102)||(2629818-2629874)
chr5 (46-112)||(4719650-4719716)
chr5 (46-112)||(35570813-35570879)
chr5 (46-107)||(3109597-3109658)
chr5 (45-91)||(844035-844081)
chr5 (46-84)||(17063865-17063903)
chr5 (43-85)||(32634705-32634747)
chr5 (45-91)||(34270544-34270590)
chr5 (46-107)||(15004734-15004795)
chr5 (46-87)||(27440479-27440520)
chr5 (44-85)||(27487885-27487926)
chr5 (58-107)||(34674868-34674917)
chr5 (44-112)||(611862-611930)
chr5 (44-72)||(6964415-6964443)
chr5 (45-85)||(9594477-9594517)
chr5 (44-72)||(12401190-12401218)
chr5 (43-107)||(14126413-14126476)
[»] chr2 (40 HSPs)
chr2 (156-226)||(29471921-29471991)
chr2 (156-228)||(40874149-40874221)
chr2 (157-227)||(24727310-24727380)
chr2 (45-114)||(43820744-43820813)
chr2 (44-105)||(22966784-22966845)
chr2 (46-115)||(24727592-24727661)
chr2 (157-221)||(15123827-15123891)
chr2 (46-102)||(25507255-25507311)
chr2 (44-112)||(29472036-29472103)
chr2 (45-112)||(13453960-13454027)
chr2 (45-112)||(40106608-40106675)
chr2 (156-226)||(10099341-10099411)
chr2 (46-115)||(40874263-40874332)
chr2 (45-97)||(31227570-31227622)
chr2 (156-226)||(10041320-10041390)
chr2 (46-112)||(15123941-15124007)
chr2 (49-115)||(40602392-40602458)
chr2 (156-221)||(9432110-9432175)
chr2 (44-85)||(27307263-27307304)
chr2 (44-84)||(1352386-1352426)
chr2 (45-105)||(37767778-37767838)
chr2 (46-102)||(45376236-45376292)
chr2 (46-85)||(3196119-3196158)
chr2 (45-112)||(7258567-7258634)
chr2 (44-83)||(19695714-19695753)
chr2 (43-106)||(34141439-34141501)
chr2 (42-112)||(9979092-9979162)
chr2 (43-85)||(29168722-29168764)
chr2 (46-88)||(30416360-30416402)
chr2 (46-112)||(31629604-31629670)
chr2 (43-85)||(42821370-42821412)
chr2 (173-226)||(14151652-14151705)
chr2 (59-112)||(15610837-15610890)
chr2 (43-115)||(5031920-5031992)
chr2 (46-106)||(15260307-15260367)
chr2 (43-87)||(29871382-29871426)
chr2 (45-93)||(31415239-31415287)
chr2 (47-83)||(39285854-39285890)
chr2 (44-72)||(41353542-41353570)
chr2 (44-112)||(44050013-44050081)
[»] chr8 (26 HSPs)
chr8 (43-112)||(26629115-26629184)
chr8 (156-221)||(37379333-37379398)
chr8 (44-112)||(30170734-30170802)
chr8 (156-221)||(30170627-30170692)
chr8 (46-97)||(8835890-8835941)
chr8 (50-112)||(37379439-37379501)
chr8 (43-105)||(43066606-43066668)
chr8 (43-112)||(13592763-13592832)
chr8 (46-109)||(42652501-42652564)
chr8 (46-112)||(4721729-4721795)
chr8 (43-113)||(7376503-7376572)
chr8 (42-84)||(39719281-39719323)
chr8 (43-85)||(41273512-41273554)
chr8 (44-105)||(2730973-2731034)
chr8 (43-84)||(5740807-5740848)
chr8 (44-97)||(5771992-5772045)
chr8 (46-83)||(13884194-13884231)
chr8 (44-85)||(20288531-20288572)
chr8 (44-85)||(20996179-20996220)
chr8 (44-85)||(21075160-21075201)
chr8 (52-112)||(14127250-14127310)
chr8 (44-72)||(33817154-33817182)
chr8 (43-107)||(35701838-35701901)
chr8 (45-85)||(36064029-36064069)
chr8 (43-83)||(37392151-37392191)
chr8 (45-73)||(44010804-44010832)
[»] chr4 (46 HSPs)
chr4 (156-228)||(54221945-54222017)
chr4 (157-219)||(35206280-35206342)
chr4 (172-224)||(45652765-45652817)
chr4 (156-207)||(10762411-10762462)
chr4 (44-112)||(961274-961342)
chr4 (47-107)||(17367446-17367506)
chr4 (44-112)||(31221411-31221478)
chr4 (44-112)||(35206166-35206234)
chr4 (46-112)||(9032780-9032845)
chr4 (46-112)||(40693628-40693694)
chr4 (66-112)||(45652661-45652707)
chr4 (46-112)||(52372197-52372263)
chr4 (46-112)||(56215605-56215671)
chr4 (156-221)||(961387-961452)
chr4 (44-85)||(3222987-3223028)
chr4 (36-85)||(5208359-5208408)
chr4 (44-85)||(7632494-7632535)
chr4 (44-85)||(44368234-44368275)
chr4 (45-85)||(15638160-15638200)
chr4 (44-112)||(50291280-50291347)
chr4 (44-92)||(50831781-50831829)
chr4 (156-219)||(5903178-5903241)
chr4 (45-84)||(21685937-21685976)
chr4 (173-228)||(45511446-45511501)
chr4 (43-85)||(8026785-8026827)
chr4 (46-112)||(24045244-24045310)
chr4 (43-85)||(24235317-24235359)
chr4 (45-83)||(42915253-42915291)
chr4 (156-230)||(52832851-52832925)
chr4 (46-115)||(3078910-3078979)
chr4 (43-84)||(9162063-9162104)
chr4 (46-83)||(12387688-12387725)
chr4 (44-73)||(37727088-37727117)
chr4 (47-112)||(40760074-40760139)
chr4 (43-112)||(50890079-50890147)
chr4 (43-112)||(51255743-51255812)
chr4 (43-72)||(53384372-53384401)
chr4 (45-85)||(1796365-1796405)
chr4 (46-106)||(8810571-8810631)
chr4 (45-85)||(31092394-31092434)
chr4 (46-106)||(32012896-32012956)
chr4 (44-112)||(44272816-44272883)
chr4 (45-85)||(50721777-50721817)
chr4 (44-84)||(51296222-51296262)
chr4 (45-85)||(51377325-51377365)
chr4 (45-85)||(55268033-55268073)
[»] scaffold1625 (1 HSPs)
scaffold1625 (43-112)||(786-855)
[»] chr6 (17 HSPs)
chr6 (48-112)||(38598-38662)
chr6 (50-107)||(10840722-10840779)
chr6 (49-102)||(13093629-13093682)
chr6 (43-92)||(31883329-31883378)
chr6 (44-112)||(17551384-17551452)
chr6 (44-112)||(20029259-20029327)
chr6 (44-83)||(1196056-1196095)
chr6 (44-83)||(3180026-3180065)
chr6 (159-206)||(13093742-13093789)
chr6 (45-112)||(34792021-34792087)
chr6 (44-85)||(8505806-8505847)
chr6 (44-105)||(31204822-31204883)
chr6 (43-84)||(31517202-31517243)
chr6 (44-112)||(2242027-2242095)
chr6 (44-84)||(15722536-15722576)
chr6 (43-91)||(26554492-26554539)
chr6 (44-112)||(33683498-33683566)
[»] scaffold0635 (1 HSPs)
scaffold0635 (156-226)||(5680-5750)
[»] scaffold0086 (1 HSPs)
scaffold0086 (47-97)||(15851-15901)
[»] scaffold0054 (1 HSPs)
scaffold0054 (43-83)||(31623-31663)


Alignment Details
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 156 - 260
Target Start/End: Complemental strand, 42663375 - 42663271
Alignment:
Q  156 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctctttagttaatagtgtgaaaagtagaaga 255  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42663375 gtccaatcacaagaggagaaaagtggttgtcaccaaagttgtctaatattagatgtacaaatatcaatcttctttagttaatagtgtgaaaagtagaaga 42663276  T
Q  256 attat 260  Q
    |||||    
T  42663275 attat 42663271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 42663514 - 42663420
Alignment:
Q  18 ctaattaggcagcaaaccttttagctaagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  42663514 ctaattaggtagcaaaccttttagctatgaaaaatgatatttttacaatcaattttcgacaacttttgaaacaatcctatatctcatactcacat 42663420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 45256691 - 45256619
Alignment:
Q  156 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctct 228  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  45256691 gtccaatcacaaaaggagaaaagtggttgtcaccaaagttgtctaatattagatgtacaaatatcaatcctct 45256619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 16829643 - 16829573
Alignment:
Q  157 tccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctc 227  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||| |||||    
T  16829643 tccaatcacaagaggagaaaagtggttgtcaccaaagttgtttaatattagttgtacaaatatcactcctc 16829573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 22588921 - 22588849
Alignment:
Q  156 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctct 228  Q
    |||||||||||| || |||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||    
T  22588921 gtccaatcacaaaagaagaaaagtggttgtcaccaaagttgtctaatattagttgtacaaatatcactcctct 22588849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 16954008 - 16954078
Alignment:
Q  157 tccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctc 227  Q
    ||||||||||| ||||||||||||| ||||||||||||||| ||||||||| ||||||||||||| |||||    
T  16954008 tccaatcacaaaaggagaaaagtggttgtcaccaaagttgtttaatattagttgtacaaatatcactcctc 16954078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 48395353 - 48395427
Alignment:
Q  156 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctcttt 230  Q
    |||||||| ||| || |||||||||| |||||||||  |||||||||||||| ||||||||||||||||||||||    
T  48395353 gtccaatctcaaaagaagaaaagtggttgtcaccaagattgtctaatattagttgtacaaatatcaatcctcttt 48395427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 48395246 - 48395317
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacatatg 115  Q
    |||||||||||||||||||||| || |||| |||||||||||||||||| |||| ||| ||||| |||||||    
T  48395246 aagagaaatgatatttgtacaaccactttttgacaacttttgaaacaactctctctcttatactcacatatg 48395317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 8352772 - 8352840
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||||| ||||| || |||| ||||| ||||||||||||| ||| ||||||||||||||    
T  8352772 aagagaaatgatatttatacaaccactttttgacaatttttgaaacaaccatctctctcatacttacat 8352840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 6892704 - 6892638
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||||||||| || | || |||||||| |||||||||||||| ||||||||| ||||    
T  6892704 gagaaatgatatttgtacaaccactctttgacaacttatgaaacaaccctctctctcatactcacat 6892638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 48314432 - 48314366
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||||||||| || ||||  |||||||||  ||||||||||| ||||||||||||||    
T  48314432 gagaaatgatatttgtacaaccactttttaacaacttttacaacaaccctctctctcatacttacat 48314366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 17909120 - 17909055
Alignment:
Q  47 agaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||| ||||||||||||||| |||| |||||||||||||| |||||||| |||| |||| ||||    
T  17909120 agaaataatatttgtacaatcattttttgacaacttttgaaataaccctctctctcgtactcacat 17909055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 22589027 - 22588966
Alignment:
Q  51 atgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||| || |||| |||||||||||||||||||| || ||||||||| ||||    
T  22589027 atgatatttgtacaaccattttttgacaacttttgaaacaaccccctctctcatactcacat 22588966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 7212618 - 7212552
Alignment:
Q  161 atcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctc 227  Q
    |||||||||| | |||||||  |||||||||| |||||||| | ||| |||||||||||||||||||    
T  7212618 atcacaagagaataaaagtgattgtcaccaaaattgtctaaaactagttgtacaaatatcaatcctc 7212552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 6427210 - 6427271
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatact 107  Q
    |||||||||||||| ||||| || |||| ||||||||||  ||||||||||| |||||||||    
T  6427210 gagaaatgatatttatacaaccactttttgacaacttttagaacaaccctctctctcatact 6427271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 41985164 - 41985123
Alignment:
Q  42 ctaagagaaatgatatttgtacaatcaattttcgacaacttt 83  Q
    |||||||||||||||||||||||||||||||  |||||||||    
T  41985164 ctaagagaaatgatatttgtacaatcaatttgtgacaacttt 41985123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 6427394 - 6427354
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    |||| |||||||||||||||||||||||| |||||||||||    
T  6427394 agaggaatgatatttgtacaatcaattttagacaacttttg 6427354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 17909024 - 17908952
Alignment:
Q  156 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctct 228  Q
    |||||||||||| ||||||||| ||| | |||| ||| ||||| |||||||| |||| |||||||| ||||||    
T  17909024 gtccaatcacaaaaggagaaaaatggttctcactaaaattgtcaaatattagttgtataaatatcactcctct 17908952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 27164909 - 27164869
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    ||||||||||||||||||||||||||||  |||||||||||    
T  27164909 agagaaatgatatttgtacaatcaatttgtgacaacttttg 27164869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 34820640 - 34820676
Alignment:
Q  76 acaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||||||||||||||||||||| ||||    
T  34820640 acaacttttgaaacaaccctctatctcatactcacat 34820676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 2849595 - 2849536
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctc 102  Q
    |||||||||||||||||||||||| | |||| || ||||||||||| ||| |||| ||||    
T  2849595 taagagaaatgatatttgtacaattattttttgataacttttgaaataactctctctctc 2849536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 29162350 - 29162311
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  29162350 gagaaatgatatttgtacaatcaatttgtgacaacttttg 29162311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 40231777 - 40231711
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||||||||||  ||||| |||||||||||  |||||| || |||||||||| ||||    
T  40231777 agagaaatgatatttgtacaat-tatttttgacaacttttgtgacaaccttccatctcatactcacat 40231711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 42552890 - 42552945
Alignment:
Q  37 tttagctaagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaac 92  Q
    |||| ||||||||||||||||||||||||||| ||||  |||| ||||| ||||||    
T  42552890 tttatctaagagaaatgatatttgtacaatcatttttatacaatttttgtaacaac 42552945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 5068697 - 5068643
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctct 97  Q
    ||||||||||||||||||||||| || |||  || ||||||||||||||| ||||    
T  5068697 taagagaaatgatatttgtacaaccattttatgataacttttgaaacaacactct 5068643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 12007261 - 12007191
Alignment:
Q  42 ctaagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||||||| |||| || |||| |||||||||||  |||||  ||| ||||||||| ||||    
T  12007261 ctaagagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactcacat 12007191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 47925341 - 47925403
Alignment:
Q  50 aatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||||| || | ||  |||||||||| ||||||||||| ||||||||| ||||    
T  47925341 aatgatatttgtacaaccactctttaacaacttttggaacaaccctctctctcatactcacat 47925403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 30864490 - 30864449
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  30864490 aagagaaatgatatttgtacaaccaatttgtgacaacttttg 30864449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 73
Target Start/End: Complemental strand, 35005170 - 35005141
Alignment:
Q  44 aagagaaatgatatttgtacaatcaatttt 73  Q
    ||||||||||||||||||||||||||||||    
T  35005170 aagagaaatgatatttgtacaatcaatttt 35005141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 38344758 - 38344799
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    ||||||||| ||||||| |||||||||||| |||||||||||    
T  38344758 aagagaaattatatttgaacaatcaatttttgacaacttttg 38344799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 27704433 - 27704500
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||||||||||  | ||||  ||||||||||  |||||| ||||||||||||| ||||    
T  27704433 aagagaaatgatatttgtacaactatttttgtacaacttttg-tacaaccttctatctcatactcacat 27704500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 31274602 - 31274562
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaactttt 84  Q
    |||||||||||||||||||||| ||||||  ||||||||||    
T  31274602 aagagaaatgatatttgtacaaccaatttgtgacaactttt 31274562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 37392041 - 37392081
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaactttt 84  Q
    |||||||||||||||||||||| || |||| ||||||||||    
T  37392041 aagagaaatgatatttgtacaaccattttttgacaactttt 37392081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 44187689 - 44187729
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaactttt 84  Q
    |||||||||||||| |||||||||| |||| ||||||||||    
T  44187689 aagagaaatgatatgtgtacaatcattttttgacaactttt 44187729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 47448824 - 47448892
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||||| |||| || |||| |||||||||||  |||||  ||| ||||||||| ||||    
T  47448824 aagagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactcacat 47448892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 48639456 - 48639389
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||||||||||| || ||||  ||||||||||  |||||| ||| ||||||||| ||||    
T  48639456 aagagaaatgatatttgtacaaccatttttgtacaacttttg-tacaaccttctctctcatactcacat 48639389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 9326944 - 9326873
Alignment:
Q  157 tccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctct 228  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  9326944 tccaatcacaagaggagaaaagtggttgtcaccaaagttgtctaatattatatgtacaaatatcaatcctct 9326873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 9327056 - 9326990
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  9327056 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccatctatctcatactcacat 9326990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 41448248 - 41448181
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||||||||| || ||||  |||||||||||||||||||||| ||||||||| ||||    
T  41448248 agagaaatgatatttgtacaaccatttttaaacaacttttgaaacaaccctctctctcatactcacat 41448181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 230
Target Start/End: Complemental strand, 11225090 - 11225016
Alignment:
Q  156 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctcttt 230  Q
    ||||||||||||||||||||||||||||||||  ||| ||||||||| |||   |||||||||||| ||||||||    
T  11225090 gtccaatcacaagaggagaaaagtggctgtcattaaaattgtctaatgttaatggtacaaatatcactcctcttt 11225016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 47187594 - 47187525
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||| ||||||||||||||||| | ||||  |||||||||||||||||||| | ||||||||||||||    
T  47187594 taagaggaatgatatttgtacaattactttttcacaacttttgaaacaaccctttctctcatacttacat 47187525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 19623326 - 19623257
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||||||||||||||| |||| || ||||||| ||||||   ||| ||||||||||||||    
T  19623326 taagagaaatgatatttgtacaatcactttttgataacttttaaaacaataatctctctcatacttacat 19623257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 31143268 - 31143336
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||| ||||||||||||||||| |||| ||||||||||||||||| | ||| ||| ||||| ||||    
T  31143268 aagagaagtgatatttgtacaatcattttttgacaacttttgaaacaatcatctctctaatactcacat 31143336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 39901589 - 39901657
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||||||||||||| |||| || || ||||| ||||||  ||||||||||||| ||||    
T  39901589 aagagaaatgatatttgtacaatcattttttgataatttttggaacaactttctatctcatactaacat 39901657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 41850945 - 41851004
Alignment:
Q  48 gaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatact 107  Q
    |||||||||||||||||| ||  ||| ||||||||||||||||||||||  |||||||||    
T  41850945 gaaatgatatttgtacaaccatattttgacaacttttgaaacaaccctccctctcatact 41851004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 48405407 - 48405476
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||||||||||| || |||  ||||||||||| ||||||  ||| ||||||||| ||||    
T  48405407 taagagaaatgatatttgtacaaccattttgtgacaacttttgtaacaactttctctctcatactcacat 48405476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 52454167 - 52454126
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    |||||||||||||||||||||||||||||  |||||||||||    
T  52454167 aagagaaatgatatttgtacaatcaatttgtgacaacttttg 52454126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 34021535 - 34021495
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    ||||||||||||||||||||||||||||  |||||||||||    
T  34021535 agagaaatgatatttgtacaatcaatttgtgacaacttttg 34021495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 37073769 - 37073841
Alignment:
Q  156 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctct 228  Q
    ||||||| ||||||| |||||||||    |||||||| || ||||||||||| ||||||||||||| ||||||    
T  37073769 gtccaataacaagagcagaaaagtgatgatcaccaaaattatctaatattagttgtacaaatatcattcctct 37073841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 5393905 - 5393846
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcata 105  Q
    ||||||||||||||||||||||| |||   ||||||||||  |||||||||| |||||||    
T  5393905 gagaaatgatatttgtacaatcattttcttacaacttttgggacaaccctctctctcata 5393846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 19150391 - 19150324
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||||||||||||| ||||  ||||||||||  |||||  ||| ||||||| ||||||    
T  19150391 agagaaatgatatttgtacaatcattttttaacaacttttgtgacaactttctctctcatatttacat 19150324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 23377979 - 23378042
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatac 106  Q
    ||||||||||||||||||| ||| || |||   ||||||||||| |||||||||| ||||||||    
T  23377979 taagagaaatgatatttgtgcaaccattttcttacaacttttgagacaaccctctctctcatac 23378042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 39284738 - 39284687
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctct 97  Q
    ||||||||||||||||| | ||| |||| |||||||||||||||||| ||||    
T  39284738 gagaaatgatatttgtatattcactttttgacaacttttgaaacaactctct 39284687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 6976942 - 6976996
Alignment:
Q  58 ttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||| |||| |||||||||| |||||||||||| | ||||||| ||||    
T  6976942 ttgtacaatcactttttgacaacttttaaaacaaccctctctatcatactcacat 6976996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 21306024 - 21306070
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaa 91  Q
    |||||||||||||||||||| ||| ||| ||||||||||||| ||||    
T  21306024 agagaaatgatatttgtacagtcattttgcgacaacttttgagacaa 21306070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 38018000 - 38017942
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctc 102  Q
    |||||||||||||||||||||| || | || |||||||| ||||||||| |||| ||||    
T  38018000 aagagaaatgatatttgtacaaccactctttgacaacttatgaaacaactctctctctc 38017942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 7287 - 7246
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    ||||||||||||||||||||||||| |||  |||||||||||    
T  7287 aagagaaatgatatttgtacaatcattttctgacaacttttg 7246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 3958090 - 3958053
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaactt 82  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  3958090 agagaaatgatatttgtacaatcaatttgtgacaactt 3958053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 35074164 - 35074123
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaactttt 84  Q
    |||||||||||||||||||||||||| |||  ||||||||||    
T  35074164 taagagaaatgatatttgtacaatcattttgggacaactttt 35074123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 36818954 - 36818995
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  36818954 aagagaaatgatatttgtacaaccaatttgtgacaacttttg 36818995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 46473125 - 46473166
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaactttt 84  Q
    ||||||||||||||||||||||| || ||| |||||||||||    
T  46473125 taagagaaatgatatttgtacaaccactttgcgacaactttt 46473166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 53102976 - 53102935
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaactttt 84  Q
    ||||||||||||||||||||| ||||||||  ||||||||||    
T  53102976 taagagaaatgatatttgtacgatcaatttgtgacaactttt 53102935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 53473608 - 53473649
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    |||||||||||||||||||||||||||||  || ||||||||    
T  53473608 aagagaaatgatatttgtacaatcaatttgtgataacttttg 53473649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 3069648 - 3069608
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttt 83  Q
    ||||||||||||||||||||||| ||||||  |||||||||    
T  3069648 taagagaaatgatatttgtacaaccaatttgtgacaacttt 3069608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 27198233 - 27198193
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaactttt 84  Q
    ||||||||||||||||||||||||| |||| || |||||||    
T  27198233 aagagaaatgatatttgtacaatcattttttgataactttt 27198193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 32931990 - 32931950
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    ||||||||||||||||||||| ||||||  |||||||||||    
T  32931990 agagaaatgatatttgtacaaccaatttgtgacaacttttg 32931950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 38359379 - 38359339
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaactttt 84  Q
    ||||||||||||||||||||||||| ||||  |||||||||    
T  38359379 aagagaaatgatatttgtacaatcattttttaacaactttt 38359339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 49361897 - 49361857
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaactttt 84  Q
    ||||||||||||||||||||||||| ||||  |||||||||    
T  49361897 aagagaaatgatatttgtacaatcatttttgtacaactttt 49361857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 50559285 - 50559217
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||||||||||  | |||| |||||||||||  ||||   ||| ||||||||||||||    
T  50559285 aagagaaatgatatttgtacaactattttttgacaacttttgtgacaattttctctctcatacttacat 50559217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 17777413 - 17777346
Alignment:
Q  160 aatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctc 227  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  17777413 aatcacaagaggagaaaagtggctgtcacctaagttgtctaatattagatgtacaaatatcactcctc 17777346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 3904293 - 3904365
Alignment:
Q  156 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctct 228  Q
    |||||||||||||||||||||| ||| ||||| |||| ||||||||| |||| ||||||||||||| ||||||    
T  3904293 gtccaatcacaagaggagaaaattggttgtcatcaaaattgtctaattttagttgtacaaatatcactcctct 3904365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 35883681 - 35883612
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||||||||||||| | |||| ||||||||||||||||||| | | ||||||||| ||||    
T  35883681 taagagaaatgatatttgtacaattattttttgacaacttttgaaacaaccatatctctcatactcacat 35883612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 1523252 - 1523187
Alignment:
Q  156 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatca 221  Q
    |||||||||| | ||||||||||||| ||||| |||| | |||||||||||| |||||||||||||    
T  1523252 gtccaatcactacaggagaaaagtggttgtcatcaaaatcgtctaatattagttgtacaaatatca 1523187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 2279283 - 2279218
Alignment:
Q  156 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatca 221  Q
    |||||||||||||||||||||| ||  ||||||||||||||| |||||||||   |||||||||||    
T  2279283 gtccaatcacaagaggagaaaaatgattgtcaccaaagttgtataatattagtgatacaaatatca 2279218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 1922495 - 1922427
Alignment:
Q  47 agaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacatatg 115  Q
    |||||||||||||||||||||| |||| || || |||||  |||||||||| ||||||||| |||||||    
T  1922495 agaaatgatatttgtacaatcactttttgataatttttgtgacaaccctctctctcatactcacatatg 1922427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 3672341 - 3672406
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||||||| ||||||||| |||||||||||  ||||  |||||||||||||| ||||    
T  3672341 gagaaatgatatttgtaccatcaatttttgacaacttttgtgacaa-tctctatctcatactcacat 3672406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 33694275 - 33694221
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctct 97  Q
    |||||||||||||||||||||||||| ||||  ||||||||| ||||||| ||||    
T  33694275 taagagaaatgatatttgtacaatcactttttaacaacttttaaaacaactctct 33694221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 40809498 - 40809559
Alignment:
Q  47 agaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatactta 109  Q
    |||||||||||||||||||| | || | ||||||||||||||||||| ||| |||||||||||    
T  40809498 agaaatgatatttgtacaat-acttattgacaacttttgaaacaaccatctctctcatactta 40809559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 4466693 - 4466760
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||||||||||| || |||| ||||||||||| ||||||  ||| ||||||| ||||||    
T  4466693 aagagaaatgatatttgtacaaccagtttt-gacaacttttgtaacaactttctgtctcatatttacat 4466760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 38520066 - 38520018
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaac 92  Q
    ||||||||| ||||||||||||||| | || ||||||||||||||||||    
T  38520066 aagagaaataatatttgtacaatcattatttgacaacttttgaaacaac 38520018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 29362763 - 29362724
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  29362763 gagaaatgatatttgtacaatcaatttatgacaacttttg 29362724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 12022008 - 12021958
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccc 94  Q
    ||||||||||||| || |||||| | |||| ||||||||||||||||||||    
T  12022008 aagagaaatgatacttttacaattactttttgacaacttttgaaacaaccc 12021958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 17526415 - 17526465
Alignment:
Q  42 ctaagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaac 92  Q
    |||||||||||||||||||||||||||  ||| ||||| |||| |||||||    
T  17526415 ctaagagaaatgatatttgtacaatcatattttgacaattttttaaacaac 17526465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 40238438 - 40238476
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaactttt 84  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  40238438 gagaaatgatatttgtacaatcattttttgacaactttt 40238476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 50528128 - 50528090
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaactttt 84  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  50528128 gagaaatgatatttgtacaatcaatttgtgacaactttt 50528090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 1523364 - 1523299
Alignment:
Q  47 agaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||||||| || |||| || ||||||||||| |||  ||| | ||||||||||||    
T  1523364 agaaatgatatttgtacaaccactttttgataacttttgaaataactatctctgtcatacttacat 1523299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 3558847 - 3558884
Alignment:
Q  47 agaaatgatatttgtacaatcaattttcgacaactttt 84  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  3558847 agaaatgatatttatacaatcaatttttgacaactttt 3558884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 5574329 - 5574265
Alignment:
Q  47 agaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||||||||||| ||||  ||||||||||  |||||| ||| ||||||||| ||||    
T  5574329 agaaatgatatttgtacaatcatttttgtacaacttttg-tacaaccttctctctcatactcacat 5574265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 9987949 - 9987990
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    ||||||||||||||||| |||| ||||||| |||||||||||    
T  9987949 aagagaaatgatatttgaacaaccaatttttgacaacttttg 9987990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 11947792 - 11947861
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||||||||||| || |||  |||||||||||  |||||  ||| ||||||||| ||||    
T  11947792 taagagaaatgatatttgtacaaccattttatgacaacttttgtgacaactttctctctcatactgacat 11947861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 35369697 - 35369765
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||||||| |||||| |||||  ||||||||||  |||||  ||||||||||||| ||||    
T  35369697 taagagaaatgatatttgaacaatc-attttttacaacttttgtgacaactttctatctcatactcacat 35369765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 72
Target Start/End: Complemental strand, 36669444 - 36669415
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattt 72  Q
    ||||||||||||||||||||||||||||||    
T  36669444 taagagaaatgatatttgtacaatcaattt 36669415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 6829863 - 6829815
Alignment:
Q  37 tttagctaagagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    ||||| |||||||||||||||||||||||  |||||  |||||||||||    
T  6829863 tttagttaagagaaatgatatttgtacaactaatttgtgacaacttttg 6829815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 25130706 - 25130742
Alignment:
Q  49 aaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    ||||||||||||||||||||||||  |||||||||||    
T  25130706 aaatgatatttgtacaatcaatttgtgacaacttttg 25130742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 30535989 - 30536057
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||||||||||||| ||||  |||| |||||  |||||  ||| ||||||||| ||||    
T  30535989 aagagaaatgatatttgtacaatcattttttaacaatttttgtgacaactttctctctcatactcacat 30536057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 42577470 - 42577514
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaa 88  Q
    |||||||||||||||||||||||||  |||  |||||||||||||    
T  42577470 aagagaaatgatatttgtacaatcacattttaacaacttttgaaa 42577514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 44672103 - 44672063
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaactttt 84  Q
    ||||||||||||||||||||||||| ||||  |||||||||    
T  44672103 aagagaaatgatatttgtacaatcattttttaacaactttt 44672063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 48858821 - 48858889
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||||| |||| || |||| |||||||||||  |||||  ||| ||||||||| ||||    
T  48858821 aagagaaatgatatttgaacaaccactttttgacaacttttgtgacaactttctctctcatactcacat 48858889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 48872377 - 48872444
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||||||||||| || |||  |||||||||| | |||||| ||| ||||||||| ||||    
T  48872377 aagagaaatgatatttgtacaaccactttatgacaactttt-agacaaccttctctctcatactcacat 48872444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 48983741 - 48983673
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||||| |||| || |||| |||||||||||  |||||  ||| ||||||||| ||||    
T  48983741 aagagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactcacat 48983673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 156 - 229
Target Start/End: Original strand, 844144 - 844217
Alignment:
Q  156 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctctt 229  Q
    |||||||||||| ||||||||||||  ||||||||||||||||||||||||| ||||||||||||| |||||||    
T  844144 gtccaatcacaaaaggagaaaagtgattgtcaccaaagttgtctaatattagttgtacaaatatcactcctctt 844217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 43057546 - 43057617
Alignment:
Q  156 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctc 227  Q
    |||||||| ||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||| |||||    
T  43057546 gtccaatcccaagaggagaaaagtggttgtcaccaaggttgtctaatattagttgtacaaatatcactcctc 43057617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 6968672 - 6968604
Alignment:
Q  156 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatc 224  Q
    |||||||||||| || ||||| |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  6968672 gtccaatcacaatagaagaaaggtggttgtcaccaaagttgtctaatattagttgtacaaatatcaatc 6968604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 34270297 - 34270226
Alignment:
Q  156 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctc 227  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||| || ||| |||||| |||||    
T  34270297 gtccaatcacaataggagaaaagtggttgtcaccaaagttgtctaatattagttgcacatatatcattcctc 34270226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 11148508 - 11148577
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||||||||||||||||||| |||||||||||  |||||  ||| ||||||||| ||||    
T  11148508 taagagaaatgatatttgtacaatcaatttttgacaacttttgtgacaacattctctctcatactcacat 11148577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 8728652 - 8728596
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctc 102  Q
    |||||||||||||||||||| || |||| ||||||||||||||||||||||| ||||    
T  8728652 gagaaatgatatttgtacaaccactttttgacaacttttgaaacaaccctctctctc 8728596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 26754709 - 26754643
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||||||||| ||| ||| ||||||||| || |||||||||| ||||||||| ||||    
T  26754709 gagaaatgatatttgtacaaccaaattttgacaactttggagacaaccctctctctcatactcacat 26754643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 41621999 - 41621933
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||||||||| || |||| |||||||||||||||||||   | ||||||||||||||    
T  41621999 gagaaatgatatttgtacaaccactttttgacaacttttgaaacaaccacatctctcatacttacat 41621933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 43057434 - 43057504
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacatatg 115  Q
    ||||||||||||||||||||| || |||| |||||||||||||| ||| | || ||||||||| |||||||    
T  43057434 agagaaatgatatttgtacaaccactttttgacaacttttgaaataactccctctctcatactcacatatg 43057504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 30838439 - 30838370
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||||||||||   | |||| ||||||||||||||||||| ||| ||||||||| ||||    
T  30838439 taagagaaatgatatttgtacatctactttttgacaacttttgaaacaaccatctctctcatactcacat 30838370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 2629818 - 2629874
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctc 102  Q
    |||||||||||||||||||| || |||| ||||||||||||||||||| ||| ||||    
T  2629818 gagaaatgatatttgtacaaccattttttgacaacttttgaaacaaccttctctctc 2629874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 4719650 - 4719716
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||||||||| ||||||| |||||||||||  |||||| | | ||||||||| ||||    
T  4719650 gagaaatgatatttgtacaaccaatttttgacaacttttgtgacaaccttttctctcatactcacat 4719716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 35570813 - 35570879
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||||||||| || ||| || ||||||| | |||||||||| ||||||||| ||||    
T  35570813 gagaaatgatatttgtacaattaaattttgataactttttagacaaccctctctctcatactcacat 35570879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 3109658 - 3109597
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatact 107  Q
    |||||||||||||||||||||||||||  |||||||||||  |||||  ||| |||||||||    
T  3109658 gagaaatgatatttgtacaatcaatttgtgacaacttttgtgacaacattctctctcatact 3109597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 844035 - 844081
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaa 91  Q
    |||||||||||||||| |||| || |||| |||||||||||||||||    
T  844035 agagaaatgatatttgcacaaccattttttgacaacttttgaaacaa 844081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 17063865 - 17063903
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaactttt 84  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  17063865 gagaaatgatatttgtacaatcattttttgacaactttt 17063903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 32634705 - 32634747
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    |||||||||||||||||||||||||||| |  |||||||||||    
T  32634705 taagagaaatgatatttgtacaatcaatctgtgacaacttttg 32634747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 34270590 - 34270544
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaa 91  Q
    |||||||||||||||||||||  ||||||  ||||||||||||||||    
T  34270590 agagaaatgatatttgtacaacaaatttttaacaacttttgaaacaa 34270544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 15004795 - 15004734
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatact 107  Q
    ||||||||||||||| |||| || |||| ||||| ||||||||||| | ||| |||||||||    
T  15004795 gagaaatgatatttggacaaccactttttgacaatttttgaaacaatcatctctctcatact 15004734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 27440479 - 27440520
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaa 87  Q
    ||||||||||||||||||||||| |||  |||||||||||||    
T  27440479 gagaaatgatatttgtacaatcattttgtgacaacttttgaa 27440520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 27487885 - 27487926
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    ||||||||||||||||| ||||||||||||  ||||||||||    
T  27487885 aagagaaatgatatttgaacaatcaatttttaacaacttttg 27487926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 34674868 - 34674917
Alignment:
Q  58 ttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatact 107  Q
    |||||||| || ||||||||||||||| |||||||| ||| |||||||||    
T  34674868 ttgtacaaccacttttcgacaacttttaaaacaaccatctttctcatact 34674917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 611862 - 611930
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||||| ||||| | |||| |||||||||||  |||||  ||| ||||||||| ||||    
T  611862 aagagaaatgatatttgaacaattactttttgacaacttttgtgacaactttctctctcatactcacat 611930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 72
Target Start/End: Complemental strand, 6964443 - 6964415
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattt 72  Q
    |||||||||||||||||||||||||||||    
T  6964443 aagagaaatgatatttgtacaatcaattt 6964415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 9594477 - 9594517
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    ||||||||||||||||||||| ||||||  |||||||||||    
T  9594477 agagaaatgatatttgtacaaccaatttgtgacaacttttg 9594517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 12401190 - 12401218
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattt 72  Q
    |||||||||||||||||||||||||||||    
T  12401190 aagagaaatgatatttgtacaatcaattt 12401218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 14126413 - 14126476
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatact 107  Q
    |||| ||||||||||||||||||||||||||   |||||||| | |||||| ||| |||||||||    
T  14126413 taagggaaatgatatttgtacaatcaattttatgcaactttt-atacaaccttctctctcatact 14126476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 29471991 - 29471921
Alignment:
Q  156 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcct 226  Q
    |||||||||||||||||||||||||| ||||| ||||||||| ||||||||| ||||||||||||| ||||    
T  29471991 gtccaatcacaagaggagaaaagtggttgtcaacaaagttgtataatattagttgtacaaatatcactcct 29471921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 40874221 - 40874149
Alignment:
Q  156 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctct 228  Q
    |||||||||||||||||||||| |   ||||||||||||||||||||||||| ||||||||||||| ||||||    
T  40874221 gtccaatcacaagaggagaaaaataattgtcaccaaagttgtctaatattagttgtacaaatatcactcctct 40874149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 24727380 - 24727310
Alignment:
Q  157 tccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctc 227  Q
    ||||||||||||||||||||| || |||||| ||||||||||||||||||| |||||| |||||| |||||    
T  24727380 tccaatcacaagaggagaaaaatgtctgtcatcaaagttgtctaatattagttgtacatatatcactcctc 24727310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 43820813 - 43820744
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacatat 114  Q
    |||||||||||||||||||||||| ||||  |||||||||||||||||| ||| ||||||||| ||||||    
T  43820813 agagaaatgatatttgtacaatcatttttttacaacttttgaaacaaccatctttctcatactcacatat 43820744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 22966784 - 22966845
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcata 105  Q
    |||||||||||||||||||||| || |||| || |||||||||||||||||||| |||||||    
T  22966784 aagagaaatgatatttgtacaaccactttttgataacttttgaaacaaccctctctctcata 22966845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 24727661 - 24727592
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacatatg 115  Q
    |||||||||||||||||||| || |||| |||||||||||||||||| |||| ||||||| | |||||||    
T  24727661 gagaaatgatatttgtacaaccactttttgacaacttttgaaacaacactctctctcatattcacatatg 24727592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 15123891 - 15123827
Alignment:
Q  157 tccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatca 221  Q
    |||||||| |||||||||||||||| |||||||||| || || |||||||| |||||||||||||    
T  15123891 tccaatcataagaggagaaaagtggttgtcaccaaaattatcaaatattagttgtacaaatatca 15123827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 25507255 - 25507311
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctc 102  Q
    |||||||||||||||||||| || |||| ||||||||||||||||||||||| ||||    
T  25507255 gagaaatgatatttgtacaaccactttttgacaacttttgaaacaaccctctctctc 25507311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 29472103 - 29472036
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||||||| ||||| |||| |||||||||||||||||||| || ||||||||| ||||    
T  29472103 aagagaaatgatatttgtaaaatcactttt-gacaacttttgaaacaaccccctctctcatactcacat 29472036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 13454027 - 13453960
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||| |||||||||| |||| |||||||||||||||||  |||| ||||||||| ||||    
T  13454027 agagaaatgatatctgtacaatcactttttgacaacttttgaaacaattctctctctcatactcacat 13453960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 40106608 - 40106675
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||||||||| || | || |||||||| |||||||||| ||| ||||||||||||||    
T  40106608 agagaaatgatatttgtacaaccactctttgacaacttatgaaacaaccatctctctcatacttacat 40106675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 10099411 - 10099341
Alignment:
Q  156 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcct 226  Q
    ||||||||||||| |||||||| ||  ||||| |||||||||||||| |||| ||||||||||||| ||||    
T  10099411 gtccaatcacaaggggagaaaattgattgtcatcaaagttgtctaattttagttgtacaaatatcattcct 10099341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 40874332 - 40874263
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacatatg 115  Q
    |||||||||||||||||||| || ||||  |||||||||||||||||| | | ||||||||| |||||||    
T  40874332 gagaaatgatatttgtacaaccattttttaacaacttttgaaacaaccatgtctctcatactcacatatg 40874263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 31227622 - 31227570
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctct 97  Q
    ||||||||||||| |||||||||| |||| |||||||||||||||||| ||||    
T  31227622 agagaaatgatatgtgtacaatcactttttgacaacttttgaaacaactctct 31227570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 10041390 - 10041320
Alignment:
Q  156 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcct 226  Q
    ||||||||||||| |||||||| ||  ||||| |||||||||||| | |||| ||||||||||||| ||||    
T  10041390 gtccaatcacaaggggagaaaattgattgtcatcaaagttgtctacttttagttgtacaaatatcattcct 10041320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 15124007 - 15123941
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||||||||| || |||| ||||||||||||||||| | | | ||||||||| ||||    
T  15124007 gagaaatgatatttgtacaaccattttttgacaacttttgaaacaatcatatctctcatactcacat 15123941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 40602458 - 40602392
Alignment:
Q  49 aaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacatatg 115  Q
    ||||||||||||||||| || |||| |||||||| | || ||||| ||||||||||||| |||||||    
T  40602458 aaatgatatttgtacaaccactttttgacaacttataaagcaaccttctatctcatactcacatatg 40602392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 9432175 - 9432110
Alignment:
Q  156 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatca 221  Q
    ||||||||| |||||||||||| | | ||||| ||||||||| |||| |||| |||||||||||||    
T  9432175 gtccaatcataagaggagaaaattagttgtcatcaaagttgtttaattttagttgtacaaatatca 9432110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 27307304 - 27307263
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    |||||||||||||||||||||||||||||  |||||||||||    
T  27307304 aagagaaatgatatttgtacaatcaatttgtgacaacttttg 27307263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 1352386 - 1352426
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaactttt 84  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
T  1352386 aagagaaatgatatttgaacaatcaatttttgacaactttt 1352426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 37767838 - 37767778
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcata 105  Q
    ||||||||||||||| ||||| || |||| ||||||||||||||||| | ||| |||||||    
T  37767838 agagaaatgatatttatacaaccactttttgacaacttttgaaacaatcatctctctcata 37767778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 45376292 - 45376236
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctc 102  Q
    |||||||||||||||||||| || |||| |||||||||||  |||||||||| ||||    
T  45376292 gagaaatgatatttgtacaaccactttttgacaacttttgtgacaaccctctctctc 45376236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 3196158 - 3196119
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  3196158 gagaaatgatatttgtacaatcaatttgtgacaacttttg 3196119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 7258634 - 7258567
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||| ||||||||||||| | || ||||||||||| |||||   ||| ||||||||||||||    
T  7258634 agagaaatgacatttgtacaatcactctttgacaacttttgtaacaattttctctctcatacttacat 7258567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 19695753 - 19695714
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttt 83  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  19695753 aagagaaatgatatttgtacaatcactttttgacaacttt 19695714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 34141439 - 34141501
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatac 106  Q
    |||||||||||||||||||||||||| ||||  ||||||||||  |||||| ||| ||||||||    
T  34141439 taagagaaatgatatttgtacaatcatttttgtacaacttttg-tacaaccttctctctcatac 34141501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 9979092 - 9979162
Alignment:
Q  42 ctaagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||||||||||||| || ||||  |||| |||||  |||||| ||| ||||||||| ||||    
T  9979092 ctaagagaaatgatatttgtacaaccactttttcacaatttttgtgacaaccatctctctcatactcacat 9979162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 29168722 - 29168764
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    ||||||||||||||||||||||| || |||| |||||||||||    
T  29168722 taagagaaatgatatttgtacaaccattttttgacaacttttg 29168764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 30416360 - 30416402
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaa 88  Q
    ||||||||||||||||||||||| |||| ||||| ||||||||    
T  30416360 gagaaatgatatttgtacaatcattttttgacaatttttgaaa 30416402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 31629604 - 31629670
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||||||||  | |||| ||||||||||| ||||||| ||| ||| ||||| ||||    
T  31629604 gagaaatgatatttgtacaactactttttgacaacttttggaacaaccatctctctaatactcacat 31629670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 42821370 - 42821412
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    |||||||||| ||||||||||||||| |||||||||| |||||    
T  42821370 taagagaaattatatttgtacaatcatttttcgacaatttttg 42821412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 14151705 - 14151652
Alignment:
Q  173 gaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcct 226  Q
    ||||||||| |||||  |||||||||||| ||||| ||||||||||||| ||||    
T  14151705 gaaaagtggttgtcaaaaaagttgtctaagattagttgtacaaatatcattcct 14151652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 15610890 - 15610837
Alignment:
Q  59 tgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||| || |||| ||||||||||||||||||||||| | ||||||| ||||    
T  15610890 tgtacaaccattttttgacaacttttgaaacaaccctctctatcatactcacat 15610837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 5031920 - 5031992
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacatatg 115  Q
    ||||||||||||||||||||||| || |||   ||||||||||  |||||  ||| ||||||||| |||||||    
T  5031920 taagagaaatgatatttgtacaaccattttgtaacaacttttgcgacaactttctctctcatactcacatatg 5031992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 15260307 - 15260367
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatac 106  Q
    ||||||||||||||| |||| || |||| |||||||||||  ||||| |||| ||||||||    
T  15260307 gagaaatgatatttgaacaaccacttttagacaacttttgtgacaactctctctctcatac 15260367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 29871426 - 29871382
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttgaa 87  Q
    |||||||||||||||||||||||| | |||  |||||||||||||    
T  29871426 taagagaaatgatatttgtacaattagtttatgacaacttttgaa 29871382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 31415287 - 31415239
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaacc 93  Q
    |||||||||||||||||||  | | |||| |||||||||||||||||||    
T  31415287 agagaaatgatatttgtacgtttactttttgacaacttttgaaacaacc 31415239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 39285854 - 39285890
Alignment:
Q  47 agaaatgatatttgtacaatcaattttcgacaacttt 83  Q
    |||||||||||||||||||||| |||| |||||||||    
T  39285854 agaaatgatatttgtacaatcactttttgacaacttt 39285890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 72
Target Start/End: Complemental strand, 41353570 - 41353542
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattt 72  Q
    |||||||||||||||||||||||||||||    
T  41353570 aagagaaatgatatttgtacaatcaattt 41353542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 44050013 - 44050081
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||| |||||||| || |||  |||||||||||  |||||| ||| ||||||||| ||||    
T  44050013 aagagaaatgatacttgtacaaccattttatgacaacttttgtgacaaccttctctctcatactcacat 44050081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 26629184 - 26629115
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||||||||||| || |||| ||||||||||||||||||||||| ||||||||| ||||    
T  26629184 taagagaaatgatatttgtacaaccactttttgacaacttttgaaacaaccctctctctcatactcacat 26629115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 37379398 - 37379333
Alignment:
Q  156 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatca 221  Q
    |||||||||||||||||||||| | | |||||||||||| |||||||||||| |||||||||||||    
T  37379398 gtccaatcacaagaggagaaaaatagttgtcaccaaagtcgtctaatattagttgtacaaatatca 37379333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 30170802 - 30170734
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||||||||||| || |||| ||||||||||||||||||| ||| ||||||||| ||||    
T  30170802 aagagaaatgatatttgtacaaccactttttgacaacttttgaaacaaccatctctctcatactcacat 30170734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 30170692 - 30170627
Alignment:
Q  156 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatca 221  Q
    |||||||||||| ||||||||| ||| |||||||||| |||||||| ||||| |||||||||||||    
T  30170692 gtccaatcacaaaaggagaaaaatggttgtcaccaaaattgtctaaaattagttgtacaaatatca 30170627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 8835941 - 8835890
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctct 97  Q
    |||||||||||||||||| |||| |||| |||||||||| ||||||||||||    
T  8835941 gagaaatgatatttgtacgatcactttttgacaacttttaaaacaaccctct 8835890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 37379501 - 37379439
Alignment:
Q  50 aatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||| || || |||| ||||||||||||||||||| ||| ||||||||| ||||    
T  37379501 aatgatatttgtagaaccactttttgacaacttttgaaacaaccatctctctcatactcacat 37379439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 43066668 - 43066606
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcata 105  Q
    ||||||||||||||||||||||| || ||||  |||||||||||||||| | ||| |||||||    
T  43066668 taagagaaatgatatttgtacaaccactttttaacaacttttgaaacaatcatctctctcata 43066606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 13592763 - 13592832
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||||||||||   | |||| |||||||||||||||||| || | ||||||||| ||||    
T  13592763 taagagaaatgatatttgtacacctattttttgacaacttttgaaacaactctatctctcatactcacat 13592832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 42652501 - 42652564
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatactta 109  Q
    ||||||||||||||||||||| || ||| |||||||||| | |||||  ||| |||||||||||    
T  42652501 gagaaatgatatttgtacaattaaattttgacaacttttaagacaactttctctctcatactta 42652564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 4721729 - 4721795
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||||||||| ||| ||| ||||||||| || |||||| | | ||||||||| ||||    
T  4721729 gagaaatgatatttgtacaaccaaattttgacaactttggatacaaccttttctctcatactcacat 4721795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 7376503 - 7376572
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacata 113  Q
    ||||||||||||||||||||||| ||||||   |||||||||| ||||||  ||| ||||||||| |||||    
T  7376503 taagagaaatgatatttgtacaaccaatttctaacaacttttg-aacaactttctctctcatactcacata 7376572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 39719323 - 39719281
Alignment:
Q  42 ctaagagaaatgatatttgtacaatcaattttcgacaactttt 84  Q
    |||| ||||||||||||||||||||||||||  ||||||||||    
T  39719323 ctaaaagaaatgatatttgtacaatcaatttgtgacaactttt 39719281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 41273512 - 41273554
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    ||||||||||||||||||||||| ||||||  |||||||||||    
T  41273512 taagagaaatgatatttgtacaaacaatttgtgacaacttttg 41273554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 2731034 - 2730973
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcata 105  Q
    ||||||||||||||||| |||| || |||| ||||||||||| ||||||  ||| |||||||    
T  2731034 aagagaaatgatatttgaacaaccactttttgacaacttttgtaacaactttctctctcata 2730973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 5740848 - 5740807
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaactttt 84  Q
    ||||||||||||||||||||||| || |||| ||||||||||    
T  5740848 taagagaaatgatatttgtacaaccactttttgacaactttt 5740807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 5772045 - 5771992
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctct 97  Q
    ||||||||||||||||| |||| || |||| ||||||||||| |||||| ||||    
T  5772045 aagagaaatgatatttgaacaaccattttttgacaacttttgtaacaactctct 5771992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 13884231 - 13884194
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttt 83  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  13884231 gagaaatgatatttgtacaatcattttttgacaacttt 13884194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 20288531 - 20288572
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  20288531 aagagaaatgatatttgtacaaccaatttgtgacaacttttg 20288572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 20996220 - 20996179
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    ||||||||||||||||||||||||| ||||  ||||||||||    
T  20996220 aagagaaatgatatttgtacaatcatttttgaacaacttttg 20996179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 21075160 - 21075201
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  21075160 aagagaaatgatatttgtacaaccaatttgtgacaacttttg 21075201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 14127250 - 14127310
Alignment:
Q  52 tgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||| || |||| ||||| ||||| ||||||| ||| ||||||||| ||||    
T  14127250 tgatatttgtacaaccactttttgacaatttttggaacaaccatctctctcatactcacat 14127310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 33817154 - 33817182
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattt 72  Q
    |||||||||||||||||||||||||||||    
T  33817154 aagagaaatgatatttgtacaatcaattt 33817182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 35701901 - 35701838
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatact 107  Q
    ||||||||||||||||||||||| || ||||  ||||||||||  |||||| ||| |||||||||    
T  35701901 taagagaaatgatatttgtacaaccatttttgtacaacttttg-tacaaccttctctctcatact 35701838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 36064029 - 36064069
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    |||||||||||||||||||||||| |||  |||||||||||    
T  36064029 agagaaatgatatttgtacaatcattttgtgacaacttttg 36064069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 37392191 - 37392151
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttt 83  Q
    ||||||||||||||||||||||| || |||| |||||||||    
T  37392191 taagagaaatgatatttgtacaaccattttttgacaacttt 37392151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 73
Target Start/End: Original strand, 44010804 - 44010832
Alignment:
Q  45 agagaaatgatatttgtacaatcaatttt 73  Q
    |||||||||||||||||||||||||||||    
T  44010804 agagaaatgatatttgtacaatcaatttt 44010832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 54222017 - 54221945
Alignment:
Q  156 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctct 228  Q
    ||||||||||||||| |||||| | | ||||||||||||||||||||||||| ||||||||||||| ||||||    
T  54222017 gtccaatcacaagagaagaaaaatagttgtcaccaaagttgtctaatattagttgtacaaatatcactcctct 54221945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 35206280 - 35206342
Alignment:
Q  157 tccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatat 219  Q
    ||||||||||||||||||||||||| | |||||| |||||||| ||||||| |||||||||||    
T  35206280 tccaatcacaagaggagaaaagtggttatcaccatagttgtctgatattagttgtacaaatat 35206342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 45652765 - 45652817
Alignment:
Q  172 agaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatc 224  Q
    |||||||||| | ||| ||||||||||||||||||||||||||||||||||||    
T  45652765 agaaaagtggttatcatcaaagttgtctaatattagatgtacaaatatcaatc 45652817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 10762462 - 10762411
Alignment:
Q  156 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattag 207  Q
    |||||||| ||||||||||||||||| ||||||||| |||||||||||||||    
T  10762462 gtccaatcccaagaggagaaaagtggttgtcaccaaggttgtctaatattag 10762411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 961274 - 961342
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||| ||||||||||||| | |||| || ||||||||||||||| |||| ||||||||| ||||    
T  961274 aagagaaataatatttgtacaataattttttgataacttttgaaacaactctctctctcatactcacat 961342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 17367446 - 17367506
Alignment:
Q  47 agaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatact 107  Q
    ||||||||||||| ||||| || |||| ||||||||||||||||||| ||| |||||||||    
T  17367446 agaaatgatatttatacaaccactttttgacaacttttgaaacaaccatctctctcatact 17367506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 31221411 - 31221478
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||||||||||||||||||  |||||||||| | |||||  ||| ||||||||||||||    
T  31221411 aagagaaatgatatttgtacaatcaatttgtgacaactttt-atacaactttctctctcatacttacat 31221478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 35206166 - 35206234
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||| |||||||||||| |||| || ||||||||||||||| |||| ||| ||||| ||||    
T  35206166 aagagaaatgatgtttgtacaatcactttttgataacttttgaaacaactctctctcttatactcacat 35206234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 9032780 - 9032845
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||||||||||||||||  |||||||||||  |||||  ||| ||||||||||||||    
T  9032780 gagaaatgatatttgtacaatcaatttgtgacaacttttg-tacaactttctctctcatacttacat 9032845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 40693694 - 40693628
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||| |||||| |||||| ||||| |||||| |||||| ||| ||||||||| ||||    
T  40693694 gagaaatgatatttatacaattaatttttgacaatttttgagacaaccttctctctcatactcacat 40693628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 45652661 - 45652707
Alignment:
Q  66 tcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||| ||||||||||||||||| ||||||||||||||| ||||    
T  45652661 tcaatttttgacaacttttgaaacaaacctctatctcatactcacat 45652707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 52372263 - 52372197
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||||||||| |||||| || ||||||||||| |||  |||||||| |||| ||||    
T  52372263 gagaaatgatatttgtacaattaatttttgataacttttgaaataactatctatctcttactcacat 52372197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 56215605 - 56215671
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||||||||| || |||| ||||||||||||| ||| | ||| ||||||||| ||||    
T  56215605 gagaaatgatatttgtacaaccactttttgacaacttttgaaccaatcatctctctcatactcacat 56215671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 961387 - 961452
Alignment:
Q  156 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatca 221  Q
    |||||||||||| |||| |||||||  | |||||||| |||| ||||||||| |||||||||||||    
T  961387 gtccaatcacaaaaggaaaaaagtgattatcaccaaaattgtttaatattagttgtacaaatatca 961452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 3222987 - 3223028
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    |||||||||||||||||||||||||||||  |||||||||||    
T  3222987 aagagaaatgatatttgtacaatcaatttgtgacaacttttg 3223028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 5208408 - 5208359
Alignment:
Q  36 ttttagctaagagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    ||||||| |||||||||||||||||||||| ||||||  |||||||||||    
T  5208408 ttttagcaaagagaaatgatatttgtacaaccaatttgtgacaacttttg 5208359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 7632535 - 7632494
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    ||||||||||||||||| |||||||||||| |||||||||||    
T  7632535 aagagaaatgatatttgaacaatcaatttttgacaacttttg 7632494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 44368275 - 44368234
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    |||||||||||||||||||||||||||||  |||||||||||    
T  44368275 aagagaaatgatatttgtacaatcaatttgtgacaacttttg 44368234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 15638160 - 15638200
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    |||||||||||||||||||||||| |||| |||||||||||    
T  15638160 agagaaatgatatttgtacaatcattttttgacaacttttg 15638200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 50291280 - 50291347
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||||||||||||| ||||  ||||||||| | |||||| ||| ||||||||| ||||    
T  50291280 aagagaaatgatatttgtacaatcatttttgtacaactttt-atacaaccttctctctcatactcacat 50291347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 50831829 - 50831781
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaac 92  Q
    |||||||||||||||||||||| || |||| ||||||||||| ||||||    
T  50831829 aagagaaatgatatttgtacaaccactttttgacaacttttgtaacaac 50831781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 5903178 - 5903241
Alignment:
Q  156 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatat 219  Q
    |||||||||||||||||||||| ||| |||||| | |||| ||||||| ||  |||||||||||    
T  5903178 gtccaatcacaagaggagaaaaatggttgtcactagagttatctaataataattgtacaaatat 5903241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 21685937 - 21685976
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaactttt 84  Q
    |||||||||||||||||| |||||||||| ||||||||||    
T  21685937 agagaaatgatatttgtaaaatcaatttttgacaactttt 21685976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 45511446 - 45511501
Alignment:
Q  173 gaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctct 228  Q
    ||||||||| |||||| |||||||| ||| ||| ||||||||||||||| ||||||    
T  45511446 gaaaagtggatgtcacaaaagttgtttaaaattggatgtacaaatatcactcctct 45511501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 8026827 - 8026785
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    ||||||||||||||||| ||||||||||||  |||||||||||    
T  8026827 taagagaaatgatatttatacaatcaatttgtgacaacttttg 8026785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 24045244 - 24045310
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||| |||| |||||||  ||||||||||  |||||| ||| ||||||||| ||||    
T  24045244 gagaaatgatatttgcacaaccaattttttacaacttttgcgacaaccttctctctcatactcacat 24045310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 24235317 - 24235359
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    ||||||||||||||||||||||||||||||  ||||| |||||    
T  24235317 taagagaaatgatatttgtacaatcaatttgtgacaatttttg 24235359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 42915291 - 42915253
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaacttt 83  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  42915291 agagaaatgatatttgtacaatcactttttgacaacttt 42915253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 52832851 - 52832925
Alignment:
Q  156 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcctcttt 230  Q
    ||||||||||||||| |||||| | | | ||| |||||||||||||| |||  |||||| |||||| ||||||||    
T  52832851 gtccaatcacaagagaagaaaattagttatcatcaaagttgtctaattttatttgtacagatatcactcctcttt 52832925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 3078979 - 3078910
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacatatg 115  Q
    ||||||||||||||||||||||| |||   ||||||||||  |||||  ||| ||||||||| |||||||    
T  3078979 gagaaatgatatttgtacaatcattttgtaacaacttttgtgacaactttctctctcatactcacatatg 3078910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 9162063 - 9162104
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaactttt 84  Q
    |||||||||||||||||||||||||| |||  ||||||||||    
T  9162063 taagagaaatgatatttgtacaatcattttgtgacaactttt 9162104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 12387725 - 12387688
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttt 83  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  12387725 gagaaatgatatttgtacaatcattttttgacaacttt 12387688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 73
Target Start/End: Complemental strand, 37727117 - 37727088
Alignment:
Q  44 aagagaaatgatatttgtacaatcaatttt 73  Q
    ||||||||||||||||||||||||||||||    
T  37727117 aagagaaatgatatttgtacaatcaatttt 37727088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 40760074 - 40760139
Alignment:
Q  47 agaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||| ||| ||| |||||| ||||| ||||||||||||||||| |||| |||| ||| ||||||    
T  40760074 agaaataatacttgaacaatctatttttgacaacttttgaaacaatcctcaatcttatatttacat 40760139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 50890147 - 50890079
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||||||||||| | ||||| |||||||||||  |||||  ||| ||||||||| ||||    
T  50890147 taagagaaatgatatttgtacaa-ctatttttgacaacttttgtgacaactttctctctcatactcacat 50890079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 51255743 - 51255812
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||||||| |||| || |||| |||||||||||  |||||  ||| ||||||||| ||||    
T  51255743 taagagaaatgatatttgaacaaccattttttgacaacttttgtgacaactttctctctcatactcacat 51255812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 72
Target Start/End: Complemental strand, 53384401 - 53384372
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattt 72  Q
    ||||||||||||||||||||||||||||||    
T  53384401 taagagaaatgatatttgtacaatcaattt 53384372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 1796365 - 1796405
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    ||||||||||||||||||||| ||||||  |||||||||||    
T  1796365 agagaaatgatatttgtacaaccaatttgtgacaacttttg 1796405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 8810571 - 8810631
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatac 106  Q
    |||||||||||||||||||| || |||   ||||||||||  |||||||||| ||||||||    
T  8810571 gagaaatgatatttgtacaaccattttcttacaacttttgggacaaccctctctctcatac 8810631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 31092394 - 31092434
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    |||||||||||||||||||||||||| || || ||||||||    
T  31092394 agagaaatgatatttgtacaatcaatcttagaaaacttttg 31092434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 32012896 - 32012956
Alignment:
Q  46 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatac 106  Q
    ||||||||||||||| |||| ||||||| |||||||||||  |||||  ||| ||||||||    
T  32012896 gagaaatgatatttgaacaaccaatttttgacaacttttgtgacaactttctctctcatac 32012956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 44272883 - 44272816
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||||||||||  | |||| |||||||||| |||||||  ||| ||||||||| ||||    
T  44272883 aagagaaatgatatttgtacaactattttttgacaactttt-aaacaactttctctctcatactcacat 44272816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 50721817 - 50721777
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    |||||||||||||||| |||| ||||||| |||||||||||    
T  50721817 agagaaatgatatttgaacaaccaatttttgacaacttttg 50721777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 51296262 - 51296222
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaactttt 84  Q
    ||||||||||||||||||||||||| |||  ||||||||||    
T  51296262 aagagaaatgatatttgtacaatcactttatgacaactttt 51296222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 51377365 - 51377325
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    ||||||||||||||||||||| ||||||  |||||||||||    
T  51377365 agagaaatgatatttgtacaaccaatttgtgacaacttttg 51377325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 55268073 - 55268033
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    ||||||||||||||||||||| ||||||  |||||||||||    
T  55268073 agagaaatgatatttgtacaaccaatttgtgacaacttttg 55268033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1625 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold1625
Description:

Target: scaffold1625; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 855 - 786
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||| ||||||||||||||||||| |||| ||||||||||||||||||| ||| ||||||||| ||||    
T  855 taagaggaatgatatttgtacaatcattttttgacaacttttgaaacaaccatctctctcatactcacat 786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 38598 - 38662
Alignment:
Q  48 gaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||||||| ||| ||| ||||||||| ||||||||||||| ||||||||| ||||    
T  38598 gaaatgatatttgtacaaccaaattttgacaactttggaaacaaccctctctctcatactcacat 38662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 10840722 - 10840779
Alignment:
Q  50 aatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatact 107  Q
    ||||||||||||||||| | |||| ||||||||||| ||||| ||||| |||||||||    
T  10840722 aatgatatttgtacaattattttttgacaacttttggaacaatcctctctctcatact 10840779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 13093629 - 13093682
Alignment:
Q  49 aaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctc 102  Q
    ||||||||||||||||| || |||| |||||||||||||||||| |||| ||||    
T  13093629 aaatgatatttgtacaaccactttttgacaacttttgaaacaactctctctctc 13093682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 31883378 - 31883329
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaac 92  Q
    ||||||||||||||||||||||| || |||| ||||||||||| ||||||    
T  31883378 taagagaaatgatatttgtacaaccactttttgacaacttttgtaacaac 31883329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 17551452 - 17551384
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||||| |||| || |||| ||||||||||| ||||||  ||| ||||||||| ||||    
T  17551452 aagagaaatgatatttgaacaaccattttttgacaacttttgtaacaactttctctctcatactcacat 17551384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 20029259 - 20029327
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||| ||||||||||| ||||| || ||||  |||||||||||||||||| ||| ||||||||| ||||    
T  20029259 aagaaaaatgatatttatacaaccactttttaacaacttttgaaacaaccttctctctcatactcacat 20029327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 1196056 - 1196095
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttt 83  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  1196056 aagagaaatgatatttgtacaatcactttttgacaacttt 1196095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 83
Target Start/End: Complemental strand, 3180065 - 3180026
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttt 83  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  3180065 aagagaaatgatatttgtacaatcattttttgacaacttt 3180026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 13093742 - 13093789
Alignment:
Q  159 caatcacaagaggagaaaagtggctgtcaccaaagttgtctaatatta 206  Q
    ||||||||| ||||||||||||| ||||||||||||| | ||||||||    
T  13093742 caatcacaaaaggagaaaagtggttgtcaccaaagttatttaatatta 13093789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 34792021 - 34792087
Alignment:
Q  45 agagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||||||||||||||||||||||| ||||  ||||||||||  |||||| ||| ||||||||| ||||    
T  34792021 agagaaatgatatttgtacaatcatttttgtacaacttttg-tacaaccttctctctcatactcacat 34792087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 8505847 - 8505806
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttg 85  Q
    ||||||||||||||||| ||||||| |||| |||||||||||    
T  8505847 aagagaaatgatatttgaacaatcattttttgacaacttttg 8505806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 31204883 - 31204822
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcata 105  Q
    |||||||||||||||| ||||| || |||| || ||||||||||| ||| |||| |||||||    
T  31204883 aagagaaatgatatttctacaaccattttttgataacttttgaaataactctctctctcata 31204822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 31517243 - 31517202
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaactttt 84  Q
    ||||||||||||||||||||||| || |||| ||||||||||    
T  31517243 taagagaaatgatatttgtacaaccactttttgacaactttt 31517202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 2242095 - 2242027
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    ||||||||||||||||| ||||||| |||| ||||| |||||  |||||  ||| ||||||||| ||||    
T  2242095 aagagaaatgatatttgaacaatcattttttgacaatttttgtgacaactttctctctcatactcacat 2242027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 15722576 - 15722536
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaactttt 84  Q
    ||||||||||||||||||||||||| |||  ||||||||||    
T  15722576 aagagaaatgatatttgtacaatcattttgtgacaactttt 15722536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 26554492 - 26554539
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaa 91  Q
    |||||| ||||||||| |||||||||||||| |||||||||||| ||||    
T  26554492 taagaggaatgatatt-gtacaatcaattttagacaacttttgagacaa 26554539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 33683498 - 33683566
Alignment:
Q  44 aagagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctctatctcatacttacat 112  Q
    |||| ||||||||||| || | | | |||| ||||||||||||||| ||||||| ||||||||| ||||    
T  33683498 aagataaatgatatttatatatttattttttgacaacttttgaaactaccctctctctcatactcacat 33683566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0635 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 5680 - 5750
Alignment:
Q  156 gtccaatcacaagaggagaaaagtggctgtcaccaaagttgtctaatattagatgtacaaatatcaatcct 226  Q
    ||||||||||||| |||||||| ||  ||||| |||||||||||| | |||| ||||||||||||| ||||    
T  5680 gtccaatcacaaggggagaaaattgattgtcatcaaagttgtctacttttagttgtacaaatatcattcct 5750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 15901 - 15851
Alignment:
Q  47 agaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccctct 97  Q
    |||||| ||||||||||||| | |||| || ||||||||||||||||||||    
T  15901 agaaataatatttgtacaataattttttgataacttttgaaacaaccctct 15851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 31663 - 31623
Alignment:
Q  43 taagagaaatgatatttgtacaatcaattttcgacaacttt 83  Q
    ||||||||||||||||||||||| || |||| |||||||||    
T  31663 taagagaaatgatatttgtacaaccattttttgacaacttt 31623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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