View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9083_high_4 (Length: 902)
Name: NF9083_high_4
Description: NF9083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9083_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 652; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 143 - 886
Target Start/End: Original strand, 2747036 - 2747798
Alignment:
| Q |
143 |
acttacaatgacaggaatgaaagcaacccaaaagtatgtgtgccaacctgaaacaataaacataaatcttaattttgattgttggacaatgacataat-g |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2747036 |
acttacaatgacaggaatgaaagcaacccaaaagtatgtgtgccaacctgaaacaataaacataaatcttaattttgattgttggacaatgacataattg |
2747135 |
T |
|
| Q |
242 |
tgacttctattgttccaagtctttgtatcataccattgatattaagcaacaaaaatatgaccacaaagatccaaagataccaactgcaaccattaaaata |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2747136 |
tgacttctattgttccaagtctttgtatcataccattgatattaagcaacataaatatgaccacaaagatccaaagataccaactgcaaccattaaaata |
2747235 |
T |
|
| Q |
342 |
aaatggtgaattagtgacaagagagaatcaacaacaatacaatataagttgcacaaagaaaatttggcctacttattatattgcttatgattgatgaaga |
441 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2747236 |
aaatggtgagttagtgacaagagagaatcaacaacattacaatataagttgcacaaagaaaatttggcctacttattat--tgcttatgattgatgaaga |
2747333 |
T |
|
| Q |
442 |
ttttgatagttatagaaactttgcatatccacatacctaataccaacaacgttttggaagtcatcttcaagtgcacggatcatgtacttgtgaaaattaa |
541 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2747334 |
ttttgatagttatagaaactttgcatatccacatacctaataccaacaacgttttggaagtcatcttcaagtgcacggatcatgtacttgtgaaaattaa |
2747433 |
T |
|
| Q |
542 |
actttggatttcccctacaatgagtctaaaatagaaaaacaaaattaataatatggttcaatcatatatataattgcaaatacataacatacaaatctta |
641 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2747434 |
actttggatttcccctacaatgagtctaaaatagaaaaacaaaattaataatatggttcaatcatatatataattgcaaatacataacatacatatctta |
2747533 |
T |
|
| Q |
642 |
ccataatgaaaccacgccttaatgtcacataatccaactttgtcactgatccataaaattgcttgaaaaatgatttctgaaatatatatgaaaaattaca |
741 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2747534 |
ccataatgaaaccacgccttaatgtcacataatccaactttgtcactgatccataaaattgcttgaaaaatgatttctgaaatataaatgaaaaattaca |
2747633 |
T |
|
| Q |
742 |
aggcataatcaactac------aatagtcaaagacaatatggtaaaaccagaaaag--------------tataatcaacctaccacccatcccattata |
821 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2747634 |
aggcataatcaactacaatattaatagtcaaagacaatatggtaaaaccagaaaagtataatcaactacatataatcaacctaccacccatcccattata |
2747733 |
T |
|
| Q |
822 |
gcataatttttgccaaaaccagtaaaacgattctttataaaagcatgctgatgaacatgagtcac |
886 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2747734 |
gcataatttttgccaaaaccagtaaaacgattctttataaaagaatgctgatgaacatgagtcac |
2747798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 270 - 721
Target Start/End: Original strand, 2755223 - 2755662
Alignment:
| Q |
270 |
cataccattgatattaagcaacaaaaatatgaccacaaagatccaaagataccaactgcaaccattaaaataaaatggtgaattagtgacaagagagaat |
369 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| |
|
|
| T |
2755223 |
cataccattgacattaagcaacaaaaatatgaccacaaagatccaaagataccaactgcaaccattaaaataaaatggtgaattaatgacaacaaagaat |
2755322 |
T |
|
| Q |
370 |
caacaacaatacaatataagttgcacaaagaaaatttggcctacttattatattgcttatgattgatgaagattttgatagttatagaaactttgcatat |
469 |
Q |
| |
|
| ||| |||| |||| | || ||||||||||||||||| | || ||| | ||||||||||| | || ||||||||||| | | |
|
|
| T |
2755323 |
acataactttacactataggctgaacaaagaaaatttggcc-----aataaatt-------actgatgaagattgtagtaaatatagaaacttgatagaa |
2755410 |
T |
|
| Q |
470 |
ccacatacctaataccaacaacgttttggaagtcatcttcaagtgcacggatcatgtacttgtgaaaattaaactttggatttcccctacaatgagtcta |
569 |
Q |
| |
|
| ||||||||||||| ||||| || | ||| ||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2755411 |
gcgcatacctaataccgacaactttcttgaaatcatcttcaagcgcacggttcatgtacttgtgaaaattaaacttcggatttcccctacaatgagtcta |
2755510 |
T |
|
| Q |
570 |
aaatagaaaaacaaaattaataatatggttcaatcatatat-ataattgcaa-atacataacatacaaatcttaccataatgaaaccacgccttaatgtc |
667 |
Q |
| |
|
||| | | ||||| ||||||||||||| ||||||||||||| ||||| |||| ||| ||| |||||||||| ||||||||||| ||||||||||| |
|
|
| T |
2755511 |
aaaca-ataaacagaattaataatatgattcaatcatatataataatggcaagata-tgcacactaaaatcttaccttaatgaaaccaagccttaatgtc |
2755608 |
T |
|
| Q |
668 |
acataatccaactttgtcactgatccataaaattgcttgaaaaatgatttctga |
721 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2755609 |
acatagtccaactttgtcacagatccataaaattgcttgaaaaatgatttctga |
2755662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 143 - 256
Target Start/End: Original strand, 2754835 - 2754946
Alignment:
| Q |
143 |
acttacaatgacaggaatgaaagcaacccaaaagtatgtgtgccaacctgaaacaataaacataaatcttaattttgattgttggacaatgacataat-g |
241 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||||||||| || |||| |||||||||||||||||| || ||| |||||| | |
|
|
| T |
2754835 |
acttacaatgacaggaatgaaagcaatccaaaaatatgtgtgccaacctgaaaccatgaacagaaatcttaattttgattg---gaaaattgcataattg |
2754931 |
T |
|
| Q |
242 |
tgacttctattgttc |
256 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2754932 |
tgacttctattgttc |
2754946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 2746934 - 2747017
Alignment:
| Q |
12 |
aaaatttacatttatatgcatgcacata--ttagactagttcaggtcgttcgataaagatctatgacctattctatttaaagca |
93 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| | |||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2746934 |
aaaatttacatttatatgcatgcacatagattataatagttcaggtggttcgacaaagatctatgacctattctatttaaagca |
2747017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 792 - 886
Target Start/End: Original strand, 2755748 - 2755842
Alignment:
| Q |
792 |
tataatcaacctaccacccatcccattatagcataatttttgccaaaaccagtaaaacgattctttataaaagcatgctgatgaacatgagtcac |
886 |
Q |
| |
|
|||||| ||||||||| ||| |||||||| ||| ||| ||||||||||||||||||| ||| ||| |||||||| || ||||||||||||||||| |
|
|
| T |
2755748 |
tataattaacctaccaaccaccccattatggcagaatctttgccaaaaccagtaaaatgatccttgataaaagcgtgttgatgaacatgagtcac |
2755842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 7e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 532 - 739
Target Start/End: Original strand, 2372741 - 2372946
Alignment:
| Q |
532 |
tgaaaattaaactttggatttcccctacaatgagtctaaaatagaaaaacaaaattaataatatggttcaatcatatatataattgcaaatacata-aca |
630 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| ||||| || || |||||||||||| |||||| ||| ||| |||| || | || ||| |
|
|
| T |
2372741 |
tgaaaattaaactttgaat---ccctacaatgagtctaatatagagaatcatcattaataatatgattcaataatagataatattggcaagatatgcaca |
2372837 |
T |
|
| Q |
631 |
tacaaatcttaccataatgaaaccacgccttaatgtcacataatccaactttgtcactgatccataaaattgcttgaaaaatgatttctgaaatatatat |
730 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||| || ||| ||||||||||||| |||||||||||||||||||||| | |||||||||||| | || |
|
|
| T |
2372838 |
ctaaaatcttaccttaatgaaaccaagccttaatgccatatagtccaactttgtcatagatccataaaattgcttgaaaatttatttctgaaataaaaat |
2372937 |
T |
|
| Q |
731 |
gaaaaatta |
739 |
Q |
| |
|
| ||||||| |
|
|
| T |
2372938 |
gcaaaatta |
2372946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 792 - 886
Target Start/End: Original strand, 2372998 - 2373092
Alignment:
| Q |
792 |
tataatcaacctaccacccatcccattatagcataatttttgccaaaaccagtaaaacgattctttataaaagcatgctgatgaacatgagtcac |
886 |
Q |
| |
|
|||||| ||||||||| || |||||||||||| ||| |||||||||||||||||| ||| ||| ||||||||||| ||||||||||||||||| |
|
|
| T |
2372998 |
tataattaacctaccaagcaccccattatagcagaatcattgccaaaaccagtaaaatgatccttgataaaagcatgttgatgaacatgagtcac |
2373092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 6e-18; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 270 - 341
Target Start/End: Complemental strand, 55322556 - 55322485
Alignment:
| Q |
270 |
cataccattgatattaagcaacaaaaatatgaccacaaagatccaaagataccaactgcaaccattaaaata |
341 |
Q |
| |
|
||||||||||||||| | |||||| || ||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
55322556 |
cataccattgatatttaacaacaagaagatgaccacaaagagccaaagataccaactgcaaccatgaaaata |
55322485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 27383556 - 27383629
Alignment:
| Q |
143 |
acttacaatgacaggaatgaaagcaacccaaaagtatgtgtgccaacctgaaacaataaacataaatcttaatt |
216 |
Q |
| |
|
||||||||||||| |||||||||||| |||||| |||||||||||| ||| ||||||| ||| | ||||||||| |
|
|
| T |
27383556 |
acttacaatgacatgaatgaaagcaaaccaaaaatatgtgtgccaatctggaacaatacacaaacatcttaatt |
27383629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 638 - 723
Target Start/End: Complemental strand, 55322128 - 55322043
Alignment:
| Q |
638 |
cttaccataatgaaaccacgccttaatgtcacataatccaactttgtcactgatccataaaattgcttgaaaaatgatttctgaaa |
723 |
Q |
| |
|
|||||| ||||||||||| | |||||||| |||||||| | |||||||| || |||||||||||||||||||| |||| |||||| |
|
|
| T |
55322128 |
cttaccgtaatgaaaccaagtcttaatgtgacataatctgattttgtcacagagccataaaattgcttgaaaaaggattgctgaaa |
55322043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 502 - 548
Target Start/End: Complemental strand, 55322305 - 55322259
Alignment:
| Q |
502 |
tcatcttcaagtgcacggatcatgtacttgtgaaaattaaactttgg |
548 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
55322305 |
tcatcttcaagggcacgaatcatgtacttgtgaaaattaaactttgg |
55322259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 1094745 - 1094688
Alignment:
| Q |
143 |
acttacaatgacaggaatgaaagcaacccaaaagtatgtgtgccaacctgaaacaata |
200 |
Q |
| |
|
||||||||||||| ||||||| |||| |||||| |||| ||||||| ||| ||||||| |
|
|
| T |
1094745 |
acttacaatgacatgaatgaatgcaaaccaaaaatatgcgtgccaatctggaacaata |
1094688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University