View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9083_low_15 (Length: 624)
Name: NF9083_low_15
Description: NF9083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9083_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 25 - 397
Target Start/End: Complemental strand, 6170021 - 6169654
Alignment:
| Q |
25 |
gatgaatgaagcatgaccagtgcgagtgatcatgtagagattagtagtagaaaccctcatccttttttggaacaaaagttgtcgacgaatggatgaaagt |
124 |
Q |
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| T |
6170021 |
gatgaatgaagcatgaccagtgcgagtgatcatgtagagattagtag---aaaccctcatccttttttggaacaaaagttgtcgacgaatgcatgaaagt |
6169925 |
T |
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| Q |
125 |
gtacacgttacgttggtcgatttgaaaacaccaacgggacaaatgaggctattgacattgcagaaaatcctatgtttgtaaataataatagcagcagcaa |
224 |
Q |
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| T |
6169924 |
gtacacgttacattggtcgatttgaaaacaccaacgggacaaatgaagctattgacattgcagaaaatcctatgtttgtaaataataatagcagcagcaa |
6169825 |
T |
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| Q |
225 |
cttcatcccattgttccaataaaccttccaaattttgtaatgttttctatgtttatcctcaaaaaacaaattccnnnnnnnnnnnnaatacaaacttttg |
324 |
Q |
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| T |
6169824 |
cttcatcccattgttccaataaaccttccaaattttgtaatgttttctatgtttatcctcaaaaaacaaattcc--atttttttttaatacaaacttttg |
6169727 |
T |
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| Q |
325 |
ttttcttacgcatgcatctccaattttattctatagggcttgaactctctatttataaaaacaatcaactacg |
397 |
Q |
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| T |
6169726 |
tattcttacgcatgcatctccaattttattctatagggcttgaactctctatttataaaaacaatcaaatacg |
6169654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 394 - 582
Target Start/End: Complemental strand, 6168649 - 6168461
Alignment:
| Q |
394 |
tacgatcacaaacggtttaggtcggaaaaacaatttatgtgagaaatatttaatccacacatagtcataaccttgaaatgttctaggcattcatttacgt |
493 |
Q |
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| T |
6168649 |
tacgattacaaacggtttaggtcggaaaaacaatttatgtgagaaatatttaatccatacatagtcataaccttgaaatgttctaggcattcatttacgt |
6168550 |
T |
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| Q |
494 |
cttcccaatttggaattctcattcaaaatttcattatcctttcttttttaatgatttaaattttcattaaaatcaaccaaacaccatca |
582 |
Q |
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| T |
6168549 |
cttcccaatttagaattctcattcaaaatttcattatcctttcttttttaatgatttaaattttcattaaaatcaaccaaacaccatca |
6168461 |
T |
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