View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9083_low_16 (Length: 624)

Name: NF9083_low_16
Description: NF9083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9083_low_16
NF9083_low_16
[»] chr5 (3 HSPs)
chr5 (18-605)||(2657411-2657972)
chr5 (312-445)||(28804413-28804546)
chr5 (235-271)||(28804297-28804333)
[»] chr2 (1 HSPs)
chr2 (29-225)||(16375392-16375587)
[»] chr7 (3 HSPs)
chr7 (310-445)||(3698310-3698445)
chr7 (124-307)||(3698082-3698265)
chr7 (384-445)||(3705148-3705209)
[»] chr1 (6 HSPs)
chr1 (129-225)||(47569331-47569427)
chr1 (142-225)||(24621565-24621648)
chr1 (126-225)||(28231704-28231803)
chr1 (151-225)||(23787227-23787301)
chr1 (124-225)||(28326529-28326630)
chr1 (318-346)||(28326151-28326179)
[»] chr4 (1 HSPs)
chr4 (310-362)||(8331735-8331787)
[»] chr8 (1 HSPs)
chr8 (153-271)||(27823832-27823949)


Alignment Details
Target: chr5 (Bit Score: 488; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 18 - 605
Target Start/End: Original strand, 2657411 - 2657972
Alignment:
Q  18 acacatttgatatcatatttattcgtaacaagattataatgttcaacattcaactcatccacgtacttttgtgtaatcttaatcataacaaacatttctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||| |    
T  2657411 acacatttgatatcatatttattcgtaacaagattataatgttcaacattcaactcatccac----ttttgtgtaatcttaatcataacaaacatttcct 2657506  T
Q  118 gttcttcctttgtatagtctatgaataatagagtgataactagcatcattaggtttgacattatctcttatcatcacagttgctgctcttttagtagatt 217  Q
    |||                      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2657507 gtt----------------------taatagagtgataactagcatcattaggtttgacattatctcttatcatcacagttgctgctcttttagtagatt 2657584  T
Q  218 tcacctctacaatgccgggatataattgagttatagcagcacctgagagtaaaatcgtcatcttttgattcattggcaatctgcagtgcacgtaattcat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2657585 tcacctctacaatgccgggatataattgagttatagcagcacccgagagtaaaatcgtcatcttttgattcattggcaatctgcagtgcacgtaattcat 2657684  T
Q  318 tgattagaataagataactatgatagttcaatacaaaatatttaagccgtgaacttcgttttctattaacaaaaacgtaagatgtcatattttaagccct 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2657685 tgattagaataagataactatgatagttcaatacaaaatatttaagccgtgaacttcgttttctattaacaaaaacgtaagatgtcatattttaagccct 2657784  T
Q  418 tcaccctgcattcaacaatttatccttatatgagagggaaattttcgctcctattccttatcaactttaataagatggagtactttacatgttaatttga 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2657785 tcaccctgcattcaacaatttatccttatatgagagggaaattttcgctcctattccttatcaactttaataagatggagtaatttacatgttaatttga 2657884  T
Q  518 atgattatgaatgacaagtaagctttttgacgaaatatcttgttaatccaataaatatatcccaccatttccatttctcgcttcagaa 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2657885 atgattatgaatgacaagtaagctttttgacgaaatatcttgttaatccaataaatatatcccaccatttccatttctcgcttcagaa 2657972  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 312 - 445
Target Start/End: Original strand, 28804413 - 28804546
Alignment:
Q  312 attcattgattagaataagataactatgatagttcaatacaaaatatttaagccgtgaacttcgttttctattaacaaaaacgtaagatgtcatatttta 411  Q
    |||||||||||| |||| ||||| ||| |||||| |||||||||| |||||||| | |||| | |||| | |||| |||||||||||||| |||||||||    
T  28804413 attcattgattataatatgataattatcatagttaaatacaaaatgtttaagccataaactaccttttatgttaataaaaacgtaagatgccatatttta 28804512  T
Q  412 agcccttcaccctgcattcaacaatttatcctta 445  Q
    |  |    |||||||||||  |||||||||||||    
T  28804513 aaacacataccctgcattctgcaatttatcctta 28804546  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 28804297 - 28804333
Alignment:
Q  235 ggatataattgagttatagcagcacctgagagtaaaa 271  Q
    |||||| |||||||||||| |||||||||||||||||    
T  28804297 ggatatgattgagttatagaagcacctgagagtaaaa 28804333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 29 - 225
Target Start/End: Complemental strand, 16375587 - 16375392
Alignment:
Q  29 atcatatttattcgtaacaagattataatgttcaacatt---caactcatccacgtacttttgtgtaatcttaatcataacaaacatttcttgttcttcc 125  Q
    ||||||||||||| ||| |||||||||||||||||||     ||||||||||||   |||||||||||||||||||||||||| || |||||| ||  ||    
T  16375587 atcatatttattcataataagattataatgttcaacaagtagcaactcatccac---cttttgtgtaatcttaatcataacaa-cacttcttgatccccc 16375492  T
Q  126 tttgtatagtctatgaataatagagtgataactagcatcattaggtttgacattatctcttatcatcacagttgctgctcttttagtagatttcacctct 225  Q
    ||||||||||||||  ||||||||||||||||||| | ||||||||||||||  | || |||||||||||  |||||| |||||| ||||||| ||||||    
T  16375491 tttgtatagtctatcgataatagagtgataactagaagcattaggtttgacaccaccttttatcatcacatgtgctgcacttttattagattttacctct 16375392  T

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Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 310 - 445
Target Start/End: Original strand, 3698310 - 3698445
Alignment:
Q  310 taattcattgattagaataagataactatgatagttcaatacaaaatatttaagccgtgaacttcgttttctattaacaaaaacgtaagatgtcatattt 409  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||| | ||||||||||  ||||||||| |||||    
T  3698310 taattcattaattagaataagataactatgatagttcaatacaaaatcgttaagccgtgaacttccttttttgttaacaaaaatataagatgtcgtattt 3698409  T
Q  410 taagcccttcaccctgcattcaacaatttatcctta 445  Q
    |||||||   | | |||||||| | |||||||||||    
T  3698410 taagcccactatcttgcattcagcgatttatcctta 3698445  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 124 - 307
Target Start/End: Original strand, 3698082 - 3698265
Alignment:
Q  124 cctttgtatagtctatgaataatagagtgataactagcatcattaggtttgacattatctcttatcatcacagttgctgctcttttagtagatttcacct 223  Q
    ||||| |||| ||||  ||||||||||| |||||||| |  || |||||||| |  | || ||||| ||| || |||| |  |||||| |||||||||||    
T  3698082 cctttatatactctaccaataatagagtaataactagtagaatgaggtttgagacaaccttttatcgtcatagctgctacatttttagcagatttcacct 3698181  T
Q  224 ctacaatgccgggatataattgagttatagcagcacctgagagtaaaatcgtcatcttttgattcattggcaatctgcagtgca 307  Q
    || || |||  |||||| | |||||||| | |||| |||||||||||| |  ||||||||||||| ||| |||| || ||||||    
T  3698182 ctgcagtgcttggatatgactgagttatggaagcatctgagagtaaaaccaccatcttttgattccttgtcaatttgtagtgca 3698265  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 445
Target Start/End: Original strand, 3705148 - 3705209
Alignment:
Q  384 taacaaaaacgtaagatgtcatattttaagcccttcaccctgcattcaacaatttatcctta 445  Q
    |||||||||  ||||||||||||||||||| |||  |||||||||||| | |||| ||||||    
T  3705148 taacaaaaatataagatgtcatattttaagacctctaccctgcattcagcgatttgtcctta 3705209  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 225
Target Start/End: Complemental strand, 47569427 - 47569331
Alignment:
Q  129 gtatagtctatgaataatagagtgataactagcatcattaggtttgacattatctcttatcatcacagttgctgctcttttagtagatttcacctct 225  Q
    ||||||||||  ||||| |||||||||||||||| |||||||||||||| || || ||||||||| ||  ||||| | ||||| |||||||||||||    
T  47569427 gtatagtctaccaataacagagtgataactagcagcattaggtttgacactaccttttatcatcaaagcagctgcacatttagcagatttcacctct 47569331  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 24621565 - 24621648
Alignment:
Q  142 ataatagagtgataactagcatcattaggtttgacattatctcttatcatcacagttgctgctcttttagtagatttcacctct 225  Q
    |||| ||| ||||||| |||| ||||||||||||||  | || ||||||||| ||||||||| ||||||  |||||||||||||    
T  24621565 ataacagattgataacaagcaacattaggtttgacaccagcttttatcatcaaagttgctgcacttttaacagatttcacctct 24621648  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 225
Target Start/End: Complemental strand, 28231803 - 28231704
Alignment:
Q  126 tttgtatagtctatgaataatagagtgataactagcatcattaggtttgacattatctcttatcatcacagttgctgctcttttagtagatttcacctct 225  Q
    ||||||||||| || |||||  ||||| ||||||||| | ||||||||||||  | || ||||||||| || |||| | ||||||| |||| ||||||||    
T  28231803 tttgtatagtccatcaataactgagtggtaactagcaacgttaggtttgacaccaccttttatcatcatagctgctacacttttagcagatctcacctct 28231704  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 23787301 - 23787227
Alignment:
Q  151 tgataactagcatcattaggtttgacattatctcttatcatcacagttgctgctcttttagtagatttcacctct 225  Q
    ||||||| |||| ||||||||||||||  | || |||||| || ||||||||| ||||||  |||||||||||||    
T  23787301 tgataacaagcaacattaggtttgacaccagcttttatcaccaaagttgctgcacttttaacagatttcacctct 23787227  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 225
Target Start/End: Complemental strand, 28326630 - 28326529
Alignment:
Q  124 cctttgtatagtctatgaataatagagtgataactagcatcattaggtttgacattatctcttatcatcacagttgctgctcttttagtagatttcacct 223  Q
    |||||||| | ||||| |||||  ||||||||||||||| |||||||| ||| |  | || ||||||| |||| | || | ||||||| |||||||||||    
T  28326630 cctttgtacaatctatcaataaccgagtgataactagcaacattaggtctgagaccaccttttatcatgacagctactacacttttagcagatttcacct 28326531  T
Q  224 ct 225  Q
    ||    
T  28326530 ct 28326529  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 346
Target Start/End: Complemental strand, 28326179 - 28326151
Alignment:
Q  318 tgattagaataagataactatgatagttc 346  Q
    |||||||||||||||||||||||||||||    
T  28326179 tgattagaataagataactatgatagttc 28326151  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 310 - 362
Target Start/End: Complemental strand, 8331787 - 8331735
Alignment:
Q  310 taattcattgattagaataagataactatgatagttcaatacaaaatatttaa 362  Q
    |||||||||||||| || || ||||||||||||||||||||||||||||||||    
T  8331787 taattcattgattacaacaaaataactatgatagttcaatacaaaatatttaa 8331735  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 153 - 271
Target Start/End: Complemental strand, 27823949 - 27823832
Alignment:
Q  153 ataactagcatcattaggtttgacattatctcttatcatcacagttgctgctcttttagtagatttcacctctacaatgccgggatataattgagttata 252  Q
    |||||||||| ||||||||||||||  | || |||| |||||| ||||||| |||||||||| |||||| | |  | |||  |||||| |||||||||||    
T  27823949 ataactagcaacattaggtttgacacca-cttttatgatcacaattgctgcacttttagtagttttcacatttgtagtgcttggatatgattgagttata 27823851  T
Q  253 gcagcacctgagagtaaaa 271  Q
     |||||| |||||||||||    
T  27823850 acagcacttgagagtaaaa 27823832  T

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