View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9083_low_17 (Length: 464)
Name: NF9083_low_17
Description: NF9083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9083_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Complemental strand, 5572333 - 5571902
Alignment:
| Q |
19 |
ctaataatccagggttcacttatccaatggatattaagcaccttgttgaccaagaaattgaaatggaatatgatatcacttcacagtttagtgcctcgag |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5572333 |
ctaataatccagggttcacttatccaatggatattaagcaccttgttgaacaagaaattgaaatggaatatgatatcacttcacagtttagtgcctcgag |
5572234 |
T |
|
| Q |
119 |
ttaaatgtgttcaagttacttgtacgtgttcattcttttactgtaaactagaattaaatcaaataagtgcaattggttctaccaccttatgtttgattct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5572233 |
ttaaatgtgttcaagttacttgtacgtgttcattcttttactgtaaactagaattaaatcaaataagtgcaattggttctaccaccttatgtttgattct |
5572134 |
T |
|
| Q |
219 |
atttgtgtttgatagtttatttgataactttagcaaaagaggtgactcacagttaggtggatgataatgatgataattaagttggtttttacaattgttg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5572133 |
atttgtgtttgatagtttatttgataactttagcaaaagaggtgactcacagttaggtggatgataatgatgataattaagttggtttttacaattgtta |
5572034 |
T |
|
| Q |
319 |
atggatatgtggaataaacaaaatctgacaattggttggcttccaattgcatagagaatattgaacaatgataacttatttaccttctcttattcagtca |
418 |
Q |
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| T |
5572033 |
atggatatgtggaataaacaaaatctgacaattggttggcttccaattgcatagagaatattgaacagtgataacttatttaccttctcttattcagtca |
5571934 |
T |
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| Q |
419 |
aagaaatgaaagaactgaaaaaatacgtgatg |
450 |
Q |
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| T |
5571933 |
aagaaatgaaagaactgaaaaaatacgtgatg |
5571902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 160 - 441
Target Start/End: Complemental strand, 5579831 - 5579556
Alignment:
| Q |
160 |
tgtaaactagaattaaatcaaataagtgcaattggttctaccaccttatgtttga-ttctatttgtgtttgatagtttatttgataactttagcaaaaga |
258 |
Q |
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|||||||||||||||| ||||||||||| |||||||||| || ||||| ||||| | ||||||||||||||| ||| ||||||| |||||||||||| |
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| T |
5579831 |
tgtaaactagaattaagtcaaataagtgtaattggttctgccgccttacatttgagtgaaatttgtgtttgatagcttagttgataaatttagcaaaaga |
5579732 |
T |
|
| Q |
259 |
ggtgactcacagttaggtggatgataatgatgataattaagttggtttttacaattgttgatggatatgtggaataaacaaaatctgacaattggttggc |
358 |
Q |
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||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||| || || ||||||||||||||||||||||||||||| |
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| T |
5579731 |
ggtgattcacagttaagcggatgataatgatgataattaagttggtttttacaattgttaatgggtaggttgaataaacaaaatctgacaattggttggc |
5579632 |
T |
|
| Q |
359 |
ttccaattgcatagagaatattgaacaatgataacttatttaccttctcttattcagtcaaagaaatgaaagaactgaaaaaa |
441 |
Q |
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|||||||||||||||| || |||||||| | |||| |||||||||| |||| |||||| ||||| || ||||||||| |
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| T |
5579631 |
ttccaattgcatagaggat-------aatgataattcatttgccttctcttagtcagccaaagagatgaatgagctgaaaaaa |
5579556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 5575278 - 5575148
Alignment:
| Q |
22 |
ataatccagggttcacttatccaatggatattaagcaccttgttgaccaagaaattgaaatggaatatgatatcacttcacagtttagtgcctcgagtta |
121 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||| ||||||||||| |||||||||| ||||| |
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| T |
5575278 |
ataattcagggttcacttatccaatggatattaagaaccttgttgaacaagaaattgaaatggaattggatttcacttcacagcttagtgcctctagtta |
5575179 |
T |
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| Q |
122 |
aatgtgttcaagttacttgtacgtgttcatt |
152 |
Q |
| |
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||| |||||||||| |||||| ||||||| |
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| T |
5575178 |
aataggttcaagttatttgtacacgttcatt |
5575148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 157 - 317
Target Start/End: Complemental strand, 5575093 - 5574933
Alignment:
| Q |
157 |
tactgtaaactagaattaaatcaaataagtgcaattggttctaccaccttatgtttgattctatttgtgtttgatagtttatttgataactttagcaaaa |
256 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||| ||||| | |||| | ||||||| | |||||||||||||| || ||||||||||||||||| |
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| T |
5575093 |
tactgtaaactagaattaaataaaataagtgtaatatgttctgctacctcaagtttgatccgatttgtgtttgataagctagttgataactttagcaaag |
5574994 |
T |
|
| Q |
257 |
gaggtgactcacagttaggtggatgataatgatgataattaagttggtttttacaattgtt |
317 |
Q |
| |
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|||||| ||| | ||| ||||||||||||||||||| || |||||||||||||||||||| |
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| T |
5574993 |
gaggtggatcaaatttaagtggatgataatgatgatagttgagttggtttttacaattgtt |
5574933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 5580010 - 5579878
Alignment:
| Q |
23 |
taatccagggttcacttatccaatggatattaagcaccttgttgaccaagaaattgaaatggaatatgatatcacttcacagtttagtgcctcgagttaa |
122 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||| ||| ||||||||||| |||||||||| |||||| |
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| T |
5580010 |
taattcagggttcacttatccaatggatattaaacaccttgttgcacaagaaattgagatggaattggatttcacttcacagcttagtgcctctagttaa |
5579911 |
T |
|
| Q |
123 |
atgtgttcaagttacttgtacgtgttcattctt |
155 |
Q |
| |
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| ||||||||||| ||||| | |||||||||| |
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| T |
5579910 |
acatgttcaagttatttgtatgcgttcattctt |
5579878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 5592006 - 5591889
Alignment:
| Q |
19 |
ctaataatccagggttcacttatccaatggatattaagcaccttgttgaccaagaaattgaaatggaatatgatatcacttcacagtttagtgcctcgag |
118 |
Q |
| |
|
||||| || ||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| ||||||||||| ||||| ||||||| |
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| T |
5592006 |
ctaatcattcagggtttgcttatccaatggatattaagcaccttgttgaacaagaaattgagatggaattggatttcacttcacagcttagttcctcgag |
5591907 |
T |
|
| Q |
119 |
ttaaatgtgttcaagtta |
136 |
Q |
| |
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|||||| ||||||||||| |
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| T |
5591906 |
ttaaatatgttcaagtta |
5591889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 5581558 - 5581477
Alignment:
| Q |
162 |
taaactagaattaaatcaaataagtgcaattggttctaccaccttatgtttgattctatttgtgtttgatagtttatttgat |
243 |
Q |
| |
|
||||||||||| ||||||||| |||| |||||||||| | ||||| |||||||| |||||||||||||| ||||||||| |
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|
| T |
5581558 |
taaactagaataaaatcaaattagtgtaattggttctctcgccttaagtttgatttgatttgtgtttgataagttatttgat |
5581477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 440
Target Start/End: Complemental strand, 5570298 - 5570246
Alignment:
| Q |
388 |
gataacttatttaccttctcttattcagtcaaagaaatgaaagaactgaaaaa |
440 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||| || |||||||| |
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| T |
5570298 |
gataacttattttccttctcttattcagtcaaagagatgaatgagctgaaaaa |
5570246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 5585766 - 5585724
Alignment:
| Q |
33 |
ttcacttatccaatggatattaagcaccttgttgaccaagaaa |
75 |
Q |
| |
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|||||||||||||||||||||||| |||||| ||| ||||||| |
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|
| T |
5585766 |
ttcacttatccaatggatattaagaaccttgctgaacaagaaa |
5585724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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