View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9083_low_19 (Length: 431)
Name: NF9083_low_19
Description: NF9083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9083_low_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 207 - 425
Target Start/End: Complemental strand, 10641980 - 10641762
Alignment:
| Q |
207 |
cctatatagagaataaagagttgacatctacaacctcatatatgatcaaaatactacatatgagtcaaatggtgttttcgcggaatttcagcattgcact |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10641980 |
cctatatagagaataaagagttgacatctacaacctcatatatgatcaaaatactacatatgggtcatatggtgttttcgcggaatttcagcattgcact |
10641881 |
T |
|
| Q |
307 |
aaagcaaagaaagaaaacaaaactacgcgaaatgtttggttaacgaagataacgagagattaaaaaccttattgaattcaagaacaattgactaaaaata |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10641880 |
aaagcaaagaaagaaaacaaaactacgcgaaatgtttggttaacgaagataatgagagattaaaaaccttattgaattcaagaacaattgactaaaaata |
10641781 |
T |
|
| Q |
407 |
attcaaaaccaacaccaaa |
425 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
10641780 |
attcaaaaccaacaccaaa |
10641762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 374 - 425
Target Start/End: Complemental strand, 10641191 - 10641139
Alignment:
| Q |
374 |
cttattgaattcaagaacaattgactaaaaat-aattcaaaaccaacaccaaa |
425 |
Q |
| |
|
|||||||||||||||||||||| | |||| || |||||||||||||||||||| |
|
|
| T |
10641191 |
cttattgaattcaagaacaatttattaaatataaattcaaaaccaacaccaaa |
10641139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 290 - 395
Target Start/End: Original strand, 28756517 - 28756622
Alignment:
| Q |
290 |
aatttcagcattgcactaaagcaaagaaagaaaacaaaactacgcgaaatgtttggttaacgaagataacgagagattaaaaaccttattgaattcaaga |
389 |
Q |
| |
|
||||||| || | ||||||| |||| ||||||||||||| ||||| ||||| |||||||| ||||||||||||||| | || | |||||||||||||||| |
|
|
| T |
28756517 |
aatttcatcactacactaaaccaaataaagaaaacaaaattacgcaaaatgcttggttaatgaagataacgagagaatgaatagcttattgaattcaaga |
28756616 |
T |
|
| Q |
390 |
acaatt |
395 |
Q |
| |
|
|||||| |
|
|
| T |
28756617 |
acaatt |
28756622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 344
Target Start/End: Complemental strand, 34333610 - 34333556
Alignment:
| Q |
290 |
aatttcagcattgcactaaagcaaagaaagaaaacaaaactacgcgaaatgtttg |
344 |
Q |
| |
|
||||||| || |||| |||| |||||||||||||||||||||| ||| ||||||| |
|
|
| T |
34333610 |
aatttcaacactgcattaaaccaaagaaagaaaacaaaactacacgatatgtttg |
34333556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 273
Target Start/End: Complemental strand, 4087843 - 4087815
Alignment:
| Q |
245 |
tatatgatcaaaatactacatatgagtca |
273 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
4087843 |
tatatgatcaaaatactacatatgagtca |
4087815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University