View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9083_low_2 (Length: 1321)
Name: NF9083_low_2
Description: NF9083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9083_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 481; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 410 - 996
Target Start/End: Original strand, 43537429 - 43538036
Alignment:
| Q |
410 |
gaaaatgattggatttaccttatagnnnnnnncctcagaaaggaaaatgaggaccaaagcagaaacaggagacaggattgcttgagaagaaaatcgcggg |
509 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43537429 |
gaaaatgattggatttaccttatagtttttttcctcagaaaggaaaatgaggaccaaagcagaaacaggagacagtattgcttgagaagaaaatcgcggg |
43537528 |
T |
|
| Q |
510 |
attatatgaaaatggaatggatatataacaatcatgtggagcaaaactctatataaaggccagttaagagattagagctttatggatacaactaccaaaa |
609 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43537529 |
attatatgaaaatggaatggatctataacaatcatgtggagcaaaactctatataaaggccagttaagaggttagagctttatggatacaactaccaaaa |
43537628 |
T |
|
| Q |
610 |
tacccttctagttgggtccaatatatata--------attatgttatgttgtggttttgtctactcatataattgagcacgtctttgtgataagtactga |
701 |
Q |
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| T |
43537629 |
tacccttctagttgggtcctatatatatatatatataattatgttatgttgtggttttgtctactcatataattgagcacgtctttgtgataagtactga |
43537728 |
T |
|
| Q |
702 |
acttgcgacatgaaagatgtaattacatg---------tatgataattgaccttccatcaatgcatgcttgacccagccattatttaccgtacacgtgtt |
792 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43537729 |
acttgcgacatgaaagatgtaattacatgtatatcatgtatgataattgaccttccatcaatgcatgcttgacccagccattatttaccgtacacgtgtt |
43537828 |
T |
|
| Q |
793 |
aggaacttatggtgtttttcattttccatgcaattgtaagactttggacacatcgtatgtgaaatagatttttgttgtcaaataatcacac----tatga |
888 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43537829 |
aggaacttatggtgtttttcattttccatgcaattgtaagactttggacacatcgtatgtgaaatagatttttgttgtcaaataatcacactatatatga |
43537928 |
T |
|
| Q |
889 |
aaccatattagctggttttgattggtgagtatggctcataggcacaaaagatcggtaaggagcgagagagttgagcgagcgtcgtgacatttgctccttt |
988 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| | |
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| T |
43537929 |
aaccatattagctggttttgattggtgagtatggctcataggcacaaaagatcggtaaggggcgagagagttgagcgaccgtcgtgacatttgctcctat |
43538028 |
T |
|
| Q |
989 |
tctttcat |
996 |
Q |
| |
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|||||||| |
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| T |
43538029 |
tctttcat |
43538036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 43537021 - 43537336
Alignment:
| Q |
8 |
gaggagcagagaatccagtaaaggaaaatgagagtcccaaacttgaagctctactaagagcagcaccactattaacctcatgatccaaatcaaccttcaa |
107 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43537021 |
gaggaacagagaatccagtaaaggaaaatgagagtcccaaacttgaagctctactaagagcagcaccactattaacctcat---ccaaatcaaccttcaa |
43537117 |
T |
|
| Q |
108 |
agaagtctggacactcctcgccttccttatgtgtgtatttcttccaccgggggatgccctccttgattttcttgtaagactcccactaccaccgtccgcc |
207 |
Q |
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| T |
43537118 |
agaagtctggacactcctcgccttccttatgtgtgtatttcttccaccgggggatgccctccttgattttctagtaagactcccactaccaccgtccgcc |
43537217 |
T |
|
| Q |
208 |
actccgaccgactcacttgatcccggtgtggac------------atcactgactctagttgttccgatttcgttctccataatccactttttccatcct |
295 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43537218 |
actccgaccgactcacttgatcccggtgtggacgtcaaatcttctaccactgactctagttgttccgatttcgttctccataatccactttttccatcct |
43537317 |
T |
|
| Q |
296 |
ccatgccaccccactaatt |
314 |
Q |
| |
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|||||||||| |||||||| |
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| T |
43537318 |
ccatgccacctcactaatt |
43537336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 1051 - 1305
Target Start/End: Original strand, 43538044 - 43538298
Alignment:
| Q |
1051 |
tatatatatgatttgtaacactttaaactaatcactcaagcaataatatagaactataattgtttccaaatcaatcgtaaacgattgtgttcattgtctt |
1150 |
Q |
| |
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||||||||||| |||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43538044 |
tatatatatgacttgtaacactgtaaattaatcactcaagtaataatatagaactataattgtttccaaatcaatcgtaaacgattgtgttcattgtctt |
43538143 |
T |
|
| Q |
1151 |
gtgatttatcttttttattattcttatgttgctagttgttgttctaataaaaatgtctttgactcgtttaatcaattgtaaatttggaccatttgatttc |
1250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43538144 |
gtgatttatcttttttattattcttatgttgctagttgttgttctaataaaaatgtctttgactcgtttaatcaattgaaaatttggaccatttgatttc |
43538243 |
T |
|
| Q |
1251 |
aatcgaatggccttcgttgcattgacggcaaagaccgcaatctacaagattcttt |
1305 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43538244 |
aatcgaatggccttcgttgcattgacggcaaagaccgcaatctacaagattcttt |
43538298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 352 - 381
Target Start/End: Original strand, 43537374 - 43537403
Alignment:
| Q |
352 |
tatttcatgtattttatgttacttcttgat |
381 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
43537374 |
tatttcatgtattttatgttacttcttgat |
43537403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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