View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9083_low_21 (Length: 425)
Name: NF9083_low_21
Description: NF9083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9083_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 20 - 417
Target Start/End: Original strand, 32482356 - 32482753
Alignment:
| Q |
20 |
aaggagacatatacttatgttttcattttctctgtgttttgttttgtgtaattttctggagacgcacacaaaacacggtatcccataaaccatttttcac |
119 |
Q |
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| T |
32482356 |
aaggagacatatacttatgttttcattttctctgtgttttgttttgtgtaattttctggagacgcacacaaaacacggtatcccataaaccatttttcac |
32482455 |
T |
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| Q |
120 |
aaatcccaattaattctctctcaactgtttcttgatttctcatgttctttgtaccnnnnnnnnnnnncctatttaggtttttgatatggaaattgagaca |
219 |
Q |
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| T |
32482456 |
aaatcccaattaattctctctcaactgtttcttgatttctcatgttctttgtaccaaaaacaaaaaacctatttaggtttttgatatggaaattgagaca |
32482555 |
T |
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| Q |
220 |
caattaaagaaactattgttgttagggttaaggnnnnnnncttcaaagaaatggctggtttgttctcattaggtggaggtggaagaggaaaccaaggaga |
319 |
Q |
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| T |
32482556 |
caattaaagaaagtattgttgttagggttaaggtttttttcttcaaagaaatggctggtttgttctcattaggaggaggtggaagaggaaaccaaggaga |
32482655 |
T |
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| Q |
320 |
agaatcacaacaacaaggtcatattccaccacaagagacactattttggtacaacaaaaacgatgatgtttcatcttacagaggtaatttagaattat |
417 |
Q |
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| T |
32482656 |
agaatcacaacaacaaggtcatattccaccacaagagacactattttggtacaacaaaaacgatgatgtttcatcttacagaggtaatttagaattat |
32482753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 91
Target Start/End: Original strand, 11308502 - 11308535
Alignment:
| Q |
58 |
ttgttttgtgtaattttctggagacgcacacaaa |
91 |
Q |
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| T |
11308502 |
ttgttttgtggaattttctggagacgcacacaaa |
11308535 |
T |
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