View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9083_low_26 (Length: 406)

Name: NF9083_low_26
Description: NF9083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9083_low_26
NF9083_low_26
[»] chr5 (3 HSPs)
chr5 (1-206)||(2910751-2910956)
chr5 (280-384)||(2911030-2911134)
chr5 (106-199)||(6385729-6385822)
[»] scaffold0020 (1 HSPs)
scaffold0020 (121-199)||(9870-9948)
[»] chr3 (2 HSPs)
chr3 (148-199)||(48170776-48170827)
chr3 (116-199)||(46927047-46927130)
[»] chr6 (3 HSPs)
chr6 (139-199)||(14861704-14861764)
chr6 (145-199)||(14865944-14865998)
chr6 (148-204)||(32734718-32734774)
[»] chr2 (1 HSPs)
chr2 (94-198)||(43284256-43284360)
[»] chr1 (2 HSPs)
chr1 (124-199)||(45704756-45704831)
chr1 (148-197)||(26684567-26684616)
[»] chr8 (2 HSPs)
chr8 (145-198)||(44617309-44617362)
chr8 (145-198)||(35144248-35144301)


Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 2910751 - 2910956
Alignment:
Q  1 agatcgattccgacgccgtttctgacgaaaacttatcaacttgttgatgattcttccgttgatgatctggtatcatggaatgaagatggaacaagcttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2910751 agatcgattccgacgccgtttctgacgaaaacttatcaacttgttgatgattcttccgttgatgatctggtatcatggaatgaagatggaacaagcttca 2910850  T
Q  101 tagtttggaaacctgctgaatttgctagagatttgcttccaaagtatttcaaacacaataatttctccagtttcgttcgtcaactcaatacctatgtaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2910851 tagtttggaaacctgctgaatttgctagagatttgcttccaaagtatttcaaacacaataatttctccagtttcgttcgtcaactcaatacctatgtaac 2910950  T
Q  201 taacta 206  Q
    ||||||    
T  2910951 taacta 2910956  T

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Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 280 - 384
Target Start/End: Original strand, 2911030 - 2911134
Alignment:
Q  280 ccttctaaattttgtgtttatttctagggatttcggaaagttgtacctgatcggtgggaatttgctaatgatggattccggcgaggcgagaaaaatctgc 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2911030 ccttctaaattttgtgtttatttctagggatttcggaaagttgtacctgatcggtgggaatttgctaatgatggattccggcgaggcgagaaaaatctgc 2911129  T
Q  380 ttcgg 384  Q
    |||||    
T  2911130 ttcgg 2911134  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 6385729 - 6385822
Alignment:
Q  106 tggaaacctgctgaatttgctagagatttgcttccaaagtatttcaaacacaataatttctccagtttcgttcgtcaactcaatacctatgtaa 199  Q
    ||||||| |||||| ||||| || ||||||||||| || ||||| || ||||| |||||||| || || |||||||| || ||||| |||||||    
T  6385729 tggaaacatgctgattttgcaagggatttgcttcctaaatattttaagcacaacaatttctctagctttgttcgtcagcttaatacttatgtaa 6385822  T

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Target: scaffold0020 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 121 - 199
Target Start/End: Original strand, 9870 - 9948
Alignment:
Q  121 tttgctagagatttgcttccaaagtatttcaaacacaataatttctccagtttcgttcgtcaactcaatacctatgtaa 199  Q
    ||||||||  |||||||||| || |||||||||||||||||||||||||| || ||||||||||||||||| |||||||    
T  9870 tttgctagtaatttgcttcctaaatatttcaaacacaataatttctccagctttgttcgtcaactcaatacttatgtaa 9948  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 48170776 - 48170827
Alignment:
Q  148 ttcaaacacaataatttctccagtttcgttcgtcaactcaatacctatgtaa 199  Q
    |||||||||| ||||||||| ||||||||||| |||||||||||||||||||    
T  48170776 ttcaaacacagtaatttctctagtttcgttcgacaactcaatacctatgtaa 48170827  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 46927130 - 46927047
Alignment:
Q  116 ctgaatttgctagagatttgcttccaaagtatttcaaacacaataatttctccagtttcgttcgtcaactcaatacctatgtaa 199  Q
    ||||||||||||||||  | || || || || ||||||||||| || ||||| || |||||||| |||||||| ||||||||||    
T  46927130 ctgaatttgctagagacctcctccctaactacttcaaacacaacaacttctctagcttcgttcgacaactcaacacctatgtaa 46927047  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 14861764 - 14861704
Alignment:
Q  139 ccaaagtatttcaaacacaataatttctccagtttcgttcgtcaactcaatacctatgtaa 199  Q
    ||||| |||||||||||||| ||||||||||| ||| | ||||| ||||||||||||||||    
T  14861764 ccaaattatttcaaacacaacaatttctccagcttcatccgtcagctcaatacctatgtaa 14861704  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 14865998 - 14865944
Alignment:
Q  145 tatttcaaacacaataatttctccagtttcgttcgtcaactcaatacctatgtaa 199  Q
    |||||||||||||| ||||||||||| ||| ||||||| |||||||| |||||||    
T  14865998 tatttcaaacacaacaatttctccagcttcattcgtcagctcaatacatatgtaa 14865944  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 32734718 - 32734774
Alignment:
Q  148 ttcaaacacaataatttctccagtttcgttcgtcaactcaatacctatgtaactaac 204  Q
    ||||||||||| |||||||| || || |||||||||||||| || ||||||| ||||    
T  32734718 ttcaaacacaacaatttctctagctttgttcgtcaactcaacacttatgtaagtaac 32734774  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 94 - 198
Target Start/End: Complemental strand, 43284360 - 43284256
Alignment:
Q  94 agcttcatagtttggaaacctgctgaatttgctagagatttgcttccaaagtatttcaaacacaataatttctccagtttcgttcgtcaactcaatacct 193  Q
    |||||||| |||||||| ||| ||||||| ||| | | | | || ||||  |||||||||||||| |||||| |||| ||| ||||||| ||||||||||    
T  43284360 agcttcatcgtttggaaccctcctgaattcgctggggttctcctcccaacctatttcaaacacaacaatttcgccagcttcattcgtcagctcaatacct 43284261  T
Q  194 atgta 198  Q
    |||||    
T  43284260 atgta 43284256  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 45704756 - 45704831
Alignment:
Q  124 gctagagatttgcttccaaagtatttcaaacacaataatttctccagtttcgttcgtcaactcaatacctatgtaa 199  Q
    ||||| ||||||||||| || ||||| || ||||| |||||||| || |||||||| ||||||||||| |||||||    
T  45704756 gctagggatttgcttcctaaatattttaagcacaacaatttctctagcttcgttcgccaactcaatacttatgtaa 45704831  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 26684616 - 26684567
Alignment:
Q  148 ttcaaacacaataatttctccagtttcgttcgtcaactcaatacctatgt 197  Q
    ||||||||||| |||||||||||||| |||||||| || ||||| |||||    
T  26684616 ttcaaacacaacaatttctccagttttgttcgtcagcttaatacttatgt 26684567  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 44617309 - 44617362
Alignment:
Q  145 tatttcaaacacaataatttctccagtttcgttcgtcaactcaatacctatgta 198  Q
    |||||||||||||||||||||||||| |||||  | |||||||||| |||||||    
T  44617309 tatttcaaacacaataatttctccagcttcgtcagacaactcaatatctatgta 44617362  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 35144248 - 35144301
Alignment:
Q  145 tatttcaaacacaataatttctccagtttcgttcgtcaactcaatacctatgta 198  Q
    |||||||| ||||| ||||||||||| ||| | ||||| |||||||||||||||    
T  35144248 tatttcaagcacaacaatttctccagcttcatccgtcagctcaatacctatgta 35144301  T

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