View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9083_low_28 (Length: 399)
Name: NF9083_low_28
Description: NF9083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9083_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 73 - 387
Target Start/End: Complemental strand, 43085170 - 43084856
Alignment:
| Q |
73 |
tttttgattctgcagaaacatcttatttcatgcccagtatatattctgttattgacatggtgacagaactttgttcttgtattttatttatctattttat |
172 |
Q |
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| T |
43085170 |
ttttggattctgcagaaacatcttatttcatgcccactatatattctgttattgacatggtgacagaacgttgttcttgtatttcatttatctattttat |
43085071 |
T |
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| Q |
173 |
tgttgattacttaggtttgtttaacctgttttatctgctgaaatatctgattgcatgtctgactaatagaaataagattagaatacacacaagttccttg |
272 |
Q |
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| T |
43085070 |
tgttgattacttaggtttgtttaacctgttttatctgctgaaatatctgattgcatgtctgactaatagaaataagattagaatacacacaagttccttg |
43084971 |
T |
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| Q |
273 |
ttcaggaactgactcaacgtagcccttttaacctagtggtggagccccctttttccttagcatgctgatgttaattattgtcatattgttgattatgtat |
372 |
Q |
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| T |
43084970 |
ttcaggaactgactcaatgtagcccttttaacccagtggtggagccccctttttccttatcatgctgatgttaattattgtcatattgttgattatgtat |
43084871 |
T |
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| Q |
373 |
ttcatttttggtctg |
387 |
Q |
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| T |
43084870 |
ttcatttttggtctg |
43084856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 256
Target Start/End: Complemental strand, 43046755 - 43046669
Alignment:
| Q |
168 |
tttattgttgattacttaggtttgtttaacctgttttatctgctgaaatatctgattgcatgtctgactaatagaaataagattagaat |
256 |
Q |
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| T |
43046755 |
tttattcttgattactgaagtttgttttacctgttatatctgctgaagaatctgattgcatgcctgattaatag--ataagattagaat |
43046669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 43085258 - 43085218
Alignment:
| Q |
18 |
aattattggcttggattgtgtattacaaacatcatcggaat |
58 |
Q |
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| T |
43085258 |
aattattgacttggattgtgtattacaaacatcatcggaat |
43085218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 234
Target Start/End: Complemental strand, 43085456 - 43085389
Alignment:
| Q |
165 |
tattttattgttgattacttaggtttgtttaacctgttttatctgctgaaatatctgattgcatgtctga |
234 |
Q |
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| T |
43085456 |
tattttaatgttgatcact--ggtttattttatctgttttatctgctgaaaaatctgattgcatgcctga |
43085389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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