View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9083_low_3 (Length: 1100)

Name: NF9083_low_3
Description: NF9083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9083_low_3
NF9083_low_3
[»] chr7 (13 HSPs)
chr7 (22-1088)||(28812117-28813177)
chr7 (354-581)||(33490943-33491170)
chr7 (430-620)||(33419821-33420011)
chr7 (837-1084)||(33420314-33420565)
chr7 (837-1084)||(33413181-33413420)
chr7 (882-1030)||(33491648-33491796)
chr7 (163-330)||(33419602-33419761)
chr7 (484-622)||(33412742-33412875)
chr7 (28-109)||(33419524-33419605)
chr7 (320-378)||(33419765-33419823)
chr7 (728-798)||(33420247-33420316)
chr7 (728-798)||(33413114-33413183)
chr7 (416-450)||(33412710-33412744)
[»] chr6 (2 HSPs)
chr6 (178-266)||(19260354-19260442)
chr6 (921-1006)||(19261362-19261447)
[»] chr1 (2 HSPs)
chr1 (933-1039)||(44983087-44983193)
chr1 (146-266)||(44983686-44983806)


Alignment Details
Target: chr7 (Bit Score: 920; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 920; E-Value: 0
Query Start/End: Original strand, 22 - 1088
Target Start/End: Complemental strand, 28813177 - 28812117
Alignment:
Q  22 gcgcgaaggctgtcgcatattggacaagatcaccaaaatcttctacagcaaccagatagttcaaaaatatctgaactccaagaagctaatagagaagttg 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28813177 gcgcgaaggctgtcgcatattggacaagatcaccaaaatcttctacagcaaccagatagttcaaagatatctgaactccaagaagctaatagagaagttg 28813078  T
Q  122 gaagggacctgttaaggcttcttcattttgtggaaatgaatgctactggtttgagaaagatcttgaagaagtttgataagcggttcggctataaattcac 221  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28813077 gaagagacctgttaaggcttcttcattttgtggaaatgaatgctactggtttgagaaagatcttgaagaagtttgataagcggttcggctataaattcac 28812978  T
Q  222 cgactattacgtcaagacacgcgcaaatcatccttattctcagctcagacaggttctaaggcacgtggtaatgtttctaaccctgactatatcatgctta 321  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28812977 cgactattatgtcaagacacgcgcaaatcatccttattctcagctcagacaggttctaaggcacgtggtaatgtttctaaccctgactatatcatgctta 28812878  T
Q  322 atgttacaaaatataaggtagtatttttgtattagaatccttttatgtgatctttgtatgtttgaaacagtatcatcatgtagtagtttctttgcaggga 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28812877 atgttacaaaatataaggtagtatttttgtattagaatccttttatgcgatctttgtatgttcgaaacagtatcatcatgtagtagtttctttgcaggga 28812778  T
Q  422 attggtgctgttgtgggagtcttgtctcataatcttgcagaccttaatgatttacagaagtgtcaaggaagctacatttctatatatgaccaaccttctt 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28812777 attggtgctgttgtgggagtcttgtctcataatcttgcagaccttaatgatttacagaagtgtcaaggaagctacatttctatatatgaccaaccttctt 28812678  T
Q  522 atgctcatcaagttagttcttgatccattgtttacatgatacttttaacctttactagctttctagtcgttcttgtgtttgatctaatactaatttgagg 621  Q
    ||||||||||||||||||||||| |                     |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28812677 atgctcatcaagttagttcttgacc---------------------aacctttactagttttctagtcgttcttgtgtttgatctaatactaatttgagg 28812599  T
Q  622 gagataaaagagtagcatagaagatattaacatacaaacataattaatatcattaacaacaattgcataattggagtttagcttttat------------ 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||                
T  28812598 gagataaaagagtagcatagaagatattaacatacaaacataattaatatcattaacaacaattgcataattggagtttagctttaattttttgtacttt 28812499  T
Q  710 ---tttactcgtacgcaaaatctaaggtattcttccaacttttgatgaggatatccttctgtcttttttcttgaaggatccaattcttgaatctatcaaa 806  Q
       ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28812498 tggtttactcatacgcaaaatctaaggtattcttccaacttttgatgaggatatccttctgtcttttttcttgaaggatccaattcttgaatctatcaaa 28812399  T
Q  807 gtagctgcagacagattatccaactcaacaaatttccttcagtttttgggaagacacgcttttatcatgcaacaagaggagatatcaccatctccatctg 906  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28812398 gtagctgcagacagattatccaactcaacaaatttccttcagtttttgggaagacacgcttttatcatgcaaccagaggagatatcaccatctccatctg 28812299  T
Q  907 aagaaaacattgtcgatgaaagatatcatttcatgtcacttcttttgaacttggcaagcacatttttgtatatggtcaatacttacatcgttgtacctac 1006  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28812298 aagaaaacattgtcgatgaaagatatcatttcatgtcacttcttttgaacttggcaagcacatttttgtatatggtcaatacttacatcgttgtacctac 28812199  T
Q  1007 ggctgacaattactcactgaaccttggagctgctgcaagtgtttgcggtgtcgtcatcggatcaatggctgttgcacaggtt 1088  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28812198 ggctgacaattactcattgaaccttggagctgctgcaagtgtttgcggtgtcgtcatcggatcaatggctgttgcacaggtt 28812117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 2e-77
Query Start/End: Original strand, 354 - 581
Target Start/End: Original strand, 33490943 - 33491170
Alignment:
Q  354 tagaatccttttatgtgatctttgtatgtttgaaacagtatcatcatgtagtagtttctttgcagggaattggtgctgttgtgggagtcttgtctcataa 453  Q
    |||| ||||||||||| |||||||   ||||||||| |||||| |||||| || ||||||| |||| | |||||||||||||||||||||||||||||||    
T  33490943 tagattccttttatgtaatctttgctcgtttgaaactgtatcagcatgtaataatttctttacaggaatttggtgctgttgtgggagtcttgtctcataa 33491042  T
Q  454 tcttgcagaccttaatgatttacagaagtgtcaaggaagctacatttctatatatgaccaaccttcttatgctcatcaagttagttcttgatccattgtt 553  Q
    |||||||  |||| ||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||    
T  33491043 tcttgcatgccttcatgatttacagaaatgtcaaggaagctacatttctatatataatcaaccttcttatgctcatcaagttagttcttgatccattatt 33491142  T
Q  554 tacatgatacttttaacctttactagct 581  Q
    |||||||||||||||| |||||||||||    
T  33491143 tacatgatacttttaatctttactagct 33491170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 147; E-Value: 6e-77
Query Start/End: Original strand, 430 - 620
Target Start/End: Original strand, 33419821 - 33420011
Alignment:
Q  430 tgttgtgggagtcttgtctcataatcttgcagaccttaatgatttacagaagtgtcaaggaagctacatttctatatatgaccaaccttcttatgctcat 529  Q
    |||||||||||||||||||||||||||||||  |||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33419821 tgttgtgggagtcttgtctcataatcttgcatgccttcatgatttacagaaatgtcaaggaagctacatttctatatataaccaaccttcttatgctcat 33419920  T
Q  530 caagttagttcttgatccattgtttacatgatacttttaacctttactagctttctagtcgttcttgtgtttgatctaatactaatttgag 620  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||| || ||||||||||||||||||| ||||||||||    
T  33419921 caagttagttcttgatccattatttacatgatacttttaatctttactagctctctaatcattcttgtgtttgatctaatgctaatttgag 33420011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 837 - 1084
Target Start/End: Original strand, 33420314 - 33420565
Alignment:
Q  837 aatttccttcagtttttgggaagacacgc----ttttatcatgcaacaagaggagatatcaccatctccatctgaagaaaacattgtcgatgaaagatat 932  Q
    |||||||||| ||||||||| ||||| ||    ||||||  ||| |||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||    
T  33420314 aatttccttcggtttttggggagacatgcatgcttttattttgctacaagaggagatatcaccatctccatctaaagaaaacattgttgatgaaatatat 33420413  T
Q  933 catttcatgtcacttcttttgaacttggcaagcacatttttgtatatggtcaatacttacatcgttgtacctacggctgacaattactcactgaaccttg 1032  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||| | | |  || |||||| |||||||||    
T  33420414 catttcatgtcacttcttttgaacttggcaagcacatttttgtatatggtcgctacttacatcattgtacctatgaccggaaactactcattgaaccttg 33420513  T
Q  1033 gagctgctgcaagtgtttgcggtgtcgtcatcggatcaatggctgttgcaca 1084  Q
    ||||||||||||||||||| ||||| ||| |||||||||||||| |||||||    
T  33420514 gagctgctgcaagtgtttgtggtgttgtcgtcggatcaatggctattgcaca 33420565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 837 - 1084
Target Start/End: Original strand, 33413181 - 33413420
Alignment:
Q  837 aatttccttcagtttttgggaagacacgcttttatcatgcaacaagaggagatatcaccatctccatctgaagaaaacattgtcgatgaaagatatcatt 936  Q
    ||||||||||||||||||| |||||| |||||||| |||| |   |||||||||||||||||||||| ||||||||||||||| |||||| |||||| ||    
T  33413181 aatttccttcagtttttggcaagacatgcttttattatgcta---gaggagatatcaccatctccatatgaagaaaacattgttgatgaacgatatcctt 33413277  T
Q  937 tcatgtcacttcttttgaacttggcaagcacatttttgtatatggtcaatacttacatcgttgtacctacggctgacaattactcactgaaccttggagc 1036  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||| |||||||| | ||||||||| | |   ||| |||||| |||||||||||||    
T  33413278 tcatgtcacttcttttgaa--tggcaagcacatttttgtatatggtcactacttacaacattgtacctaagac---caactactcattgaaccttggagc 33413372  T
Q  1037 tgctgcaagtgtttgcggtgtcgtcatcggatcaatggctgttgcaca 1084  Q
    ||||||||||||||| |||||| ||| |||||||||| || |||||||    
T  33413373 tgctgcaagtgtttgtggtgtcatcaacggatcaatgactattgcaca 33413420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 882 - 1030
Target Start/End: Original strand, 33491648 - 33491796
Alignment:
Q  882 gaggagatatcaccatctccatctgaagaaaacattgtcgatgaaagatatcatttcatgtcacttcttttgaacttggcaagcacatttttgtatatgg 981  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||    
T  33491648 gaggagatatcaccatctccatctgaagaaaacattgttgatgaaagatatcatttcatgccacttcttttgaacctgacaagcacatttttgtatatgg 33491747  T
Q  982 tcaatacttacatcgttgtacctacggctgacaattactcactgaacct 1030  Q
    ||| || ||||| | ||||||||| | | ||||| |||||| |||||||    
T  33491748 tcactatttacaacattgtacctaggaccgacaactactcattgaacct 33491796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 163 - 330
Target Start/End: Original strand, 33419602 - 33419761
Alignment:
Q  163 gctactggtttgagaaagatcttgaagaagtttgataagcggttcggctataaattcaccgactattacgtcaagacacgcgcaaatcatccttattctc 262  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| ||||||||||| ||| ||||    
T  33419602 gctactggtttgagaaagatgttgaagaagtttgataagcggttcggctatacattcaccgactatcatgtcaagacacacgcaaatcatctttactctc 33419701  T
Q  263 agctcagacaggttctaaggcacgtggtaatgtttctaaccctgactatatcatgcttaatgttacaa 330  Q
    |  | |||||||||         ||| |||||||||||||||||||||||||||| ||||||||||||    
T  33419702 atgtaagacaggtt--------tgtgataatgtttctaaccctgactatatcatgtttaatgttacaa 33419761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 484 - 622
Target Start/End: Original strand, 33412742 - 33412875
Alignment:
Q  484 tcaaggaagctacatttctatatatgaccaaccttcttatgctcatcaagttagttcttgatccattgtttacatgatacttttaacctttactagcttt 583  Q
    ||||||||||||||||||||||||| ||||   |||||||||||||||||||||||||||||| ||||||  ||||||| |||||| ||||||||||| |    
T  33412742 tcaaggaagctacatttctatatataacca---ttcttatgctcatcaagttagttcttgatcaattgttggcatgata-ttttaatctttactagctct 33412837  T
Q  584 ctagtcgttcttgtgtttgatctaatactaatttgaggg 622  Q
    |||  | ||||||  ||||||||||||||||||||||||    
T  33412838 ctaacccttcttg-atttgatctaatactaatttgaggg 33412875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 33419524 - 33419605
Alignment:
Q  28 aggctgtcgcatattggacaagatcaccaaaatcttctacagcaaccagatagttcaaaaatatctgaactccaagaagcta 109  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||  ||||| ||||||||| ||||||||||||    
T  33419524 aggctgtcgcatattggaaaagatcaccaaaatcttctatagcaaccagataactcaaagatatctgaaatccaagaagcta 33419605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 378
Target Start/End: Original strand, 33419765 - 33419823
Alignment:
Q  320 taatgttacaaaatataaggtagtatttttgtattagaatccttttatgtgatctttgt 378  Q
    ||||||||||||||||||| || |||||||||| |||| ||||||||||| ||||||||    
T  33419765 taatgttacaaaatataagataatatttttgtaatagattccttttatgtaatctttgt 33419823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 728 - 798
Target Start/End: Original strand, 33420247 - 33420316
Alignment:
Q  728 ctaaggtattcttccaacttttgatgaggatatccttctgtcttttttcttgaaggatccaattcttgaat 798  Q
    ||||||||||||||||||  ||||||||||| ||||| |||| |||| ||||||||||| |||||||||||    
T  33420247 ctaaggtattcttccaacacttgatgaggatctccttatgtc-ttttacttgaaggatcaaattcttgaat 33420316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 728 - 798
Target Start/End: Original strand, 33413114 - 33413183
Alignment:
Q  728 ctaaggtattcttccaacttttgatgaggatatccttctgtcttttttcttgaaggatccaattcttgaat 798  Q
    |||||||||| |||||||  ||||||||||| |||||||||| |||| |  ||||||||||||||||||||    
T  33413114 ctaaggtatttttccaacacttgatgaggatctccttctgtc-ttttacaagaaggatccaattcttgaat 33413183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 416 - 450
Target Start/End: Original strand, 33412710 - 33412744
Alignment:
Q  416 cagggaattggtgctgttgtgggagtcttgtctca 450  Q
    ||||||||||| |||||||||||||||||||||||    
T  33412710 cagggaattggagctgttgtgggagtcttgtctca 33412744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 266
Target Start/End: Original strand, 19260354 - 19260442
Alignment:
Q  178 aagatcttgaagaagtttgataagcggttcggctataaattcaccgactattacgtcaagacacgcgcaaatcatccttattctcagct 266  Q
    ||||| |||||||||||||||||||| || || |||| |||||| || || || ||||| || || |||||||||||||||||||||||    
T  19260354 aagatattgaagaagtttgataagcgctttggttatagattcactgattactatgtcaaaactcgtgcaaatcatccttattctcagct 19260442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 921 - 1006
Target Start/End: Original strand, 19261362 - 19261447
Alignment:
Q  921 gatgaaagatatcatttcatgtcacttcttttgaacttggcaagcacatttttgtatatggtcaatacttacatcgttgtacctac 1006  Q
    ||||||| ||| ||||| ||||| |||||  |||||||||||| |||||||||||||||| ||||||| || ||| |||| |||||    
T  19261362 gatgaaaaataccattttatgtctcttctgctgaacttggcaaacacatttttgtatatgatcaatacatatatcattgttcctac 19261447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 933 - 1039
Target Start/End: Complemental strand, 44983193 - 44983087
Alignment:
Q  933 catttcatgtcacttcttttgaacttggcaagcacatttttgtatatggtcaatacttacatcgttgtacctacggctgacaattactcactgaaccttg 1032  Q
    ||||| ||||| ||||| || |||||||| | |||||||||||||||||||||||| || ||| |||| ||||| || ||  |||||||  || ||||||    
T  44983193 cattttatgtctcttctattaaacttggctaacacatttttgtatatggtcaatacatatatcattgtccctacagcagatgattactctatgtaccttg 44983094  T
Q  1033 gagctgc 1039  Q
    | |||||    
T  44983093 gggctgc 44983087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 266
Target Start/End: Complemental strand, 44983806 - 44983686
Alignment:
Q  146 attttgtggaaatgaatgctactggtttgagaaagatcttgaagaagtttgataagcggttcggctataaattcaccgactattacgtcaagacacgcgc 245  Q
    ||||||| || || ||||||  ||||||| |||| ||||||||||||||||| || || || ||||||| ||| || || || ||||| || || || ||    
T  44983806 attttgtagagataaatgctgttggtttgcgaaaaatcttgaagaagtttgacaaacgctttggctatagatttactgattactacgttaaaactcgtgc 44983707  T
Q  246 aaatcatccttattctcagct 266  Q
     |||||||||||||| |||||    
T  44983706 gaatcatccttattcccagct 44983686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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