View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9083_low_37 (Length: 330)
Name: NF9083_low_37
Description: NF9083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9083_low_37 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 312
Target Start/End: Original strand, 9086540 - 9086835
Alignment:
| Q |
17 |
agcaaaaatgtcagataaatgctatggacatgtctcaatgtcttcaggatgctgcaagatgttatcagcatgtctaagcatatatagtcatttgtttaga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9086540 |
agcaaaaatgtcagataaatgctatggacatgtctcaatgtcttcaggatgctgcaagatgttatcagcatgtctaagcatatatagtcatttgtttaga |
9086639 |
T |
|
| Q |
117 |
agtgtaccattctttggtgataagttgtattcttacccccctcttggaatcaactcaatgtggatttttctttgcaatattattgatccttaaaatttaa |
216 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9086640 |
agtgtaccattctttggtgataagctgtattcttacccccctcttggaatcaactcaatgtggatttttctttgcaatattattgatccttaaaatgtaa |
9086739 |
T |
|
| Q |
217 |
agcttgttgtaacaaatcatgagctatactatgtgcattaaccgctcattttcgccaaatttatcaatgagctcctaaacacaatcaacctctctg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9086740 |
agcttgttgtaacaaatcatgagctatactatgtgcattaaccgctcattttcgccaaatttatcaatgagctcctaaacacaatcaacctctctg |
9086835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University