View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9083_low_40 (Length: 324)

Name: NF9083_low_40
Description: NF9083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9083_low_40
NF9083_low_40
[»] chr3 (2 HSPs)
chr3 (8-304)||(32832126-32832422)
chr3 (8-304)||(32845407-32845703)
[»] chr6 (1 HSPs)
chr6 (8-304)||(17932221-17932517)
[»] chr1 (1 HSPs)
chr1 (29-309)||(46188764-46189050)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 304
Target Start/End: Complemental strand, 32832422 - 32832126
Alignment:
Q  8 taaagacgtacctcaggtacttggtgaaacactcctttcaaatatttccactttaggttctgaaatattgccactttcagagaagttttggtatgctgtt 107  Q
    |||||||||| |||||| |  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  32832422 taaagacgtagctcaggcagctggtgaaacactcctttcaaatatttccactttaggttcggaaatattgccactttcagagaagttttggtatgttgtt 32832323  T
Q  108 tcattgataaaagagaggtttataaaatccgagggaatatatgtgcctgattttaagactgtgatacagcatttcatattaccttgttcagggaagggat 207  Q
    ||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| | |||||| ||||     
T  32832322 tccatgataaaagagaggtttataaaatctgagggaatatatgtgcctgattttaagactgtgatacaacatttcatattgccttctccagggaggggag 32832223  T
Q  208 tcattagaggggtaggaaaatggttgaaacttggtgagagagagactgaagctgcttggatgacactacataggtttggaaaccaatcttcttcatc 304  Q
    | |||||||||||||||||| |||||||||||||||||||||| |  |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32832222 tgattagaggggtaggaaaaaggttgaaacttggtgagagagatatggaagctgctttgatgacactacataggtttggaaaccaatcttcttcatc 32832126  T

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Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 304
Target Start/End: Complemental strand, 32845703 - 32845407
Alignment:
Q  8 taaagacgtacctcaggtacttggtgaaacactcctttcaaatatttccactttaggttctgaaatattgccactttcagagaagttttggtatgctgtt 107  Q
    |||||||||| |||||| |  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  32845703 taaagacgtagctcaggcagctggtgaaacactcctttcaaatatttccactttaggttcggaaatattgccactttcagagaagttttggtatgttgtt 32845604  T
Q  108 tcattgataaaagagaggtttataaaatccgagggaatatatgtgcctgattttaagactgtgatacagcatttcatattaccttgttcagggaagggat 207  Q
    ||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| | |||||| ||||     
T  32845603 tccatgataaaagagaggtttataaaatctgagggaatatatgtgcctgattttaagactgtgatacaacatttcatattgccttctccagggaggggag 32845504  T
Q  208 tcattagaggggtaggaaaatggttgaaacttggtgagagagagactgaagctgcttggatgacactacataggtttggaaaccaatcttcttcatc 304  Q
    | |||||||||||||||||| |||||||||||||||||||||| |  |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32845503 tgattagaggggtaggaaaaaggttgaaacttggtgagagagatatggaagctgctttgatgacactacataggtttggaaaccaatcttcttcatc 32845407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 304
Target Start/End: Original strand, 17932221 - 17932517
Alignment:
Q  8 taaagacgtacctcaggtacttggtgaaacactcctttcaaatatttccactttaggttctgaaatattgccactttcagagaagttttggtatgctgtt 107  Q
    ||||||||||  ||||| |  |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  17932221 taaagacgtagttcaggcagctggtgaaatactcctttcaaatatttccactttaggttctgaaatattgccagtttcagagaagttttggtatgttgtt 17932320  T
Q  108 tcattgataaaagagaggtttataaaatccgagggaatatatgtgcctgattttaagactgtgatacagcatttcatattaccttgttcagggaagggat 207  Q
    ||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| ||||     
T  17932321 tctatgataaaagagaggtttataaaatctgagggaatatatgtgcctgattttaagactgtgatacaacatttcatattgccttgtccagggaggggag 17932420  T
Q  208 tcattagaggggtaggaaaatggttgaaacttggtgagagagagactgaagctgcttggatgacactacataggtttggaaaccaatcttcttcatc 304  Q
    | |||||||||||||||||| |||||||||||||||||||||| |  |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17932421 tgattagaggggtaggaaaaaggttgaaacttggtgagagagatatggaagctgctttgatgacactacataggtttggaaaccaatcttcttcatc 17932517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 29 - 309
Target Start/End: Original strand, 46188764 - 46189050
Alignment:
Q  29 tggtgaaacactcctttcaaatatttccactttaggttctgaaatattgccactttcagagaagttttggtatgctgtttcattgataaaagagaggttt 128  Q
    |||||||||||| | |||||||||||| |   | |||||||||||||||||| |||||||||| |||||||||   |||||  |||| ||| ||||||||    
T  46188764 tggtgaaacacttcgttcaaatatttcaatcattggttctgaaatattgccagtttcagagaaattttggtatttagtttctgtgatgaaaaagaggttt 46188863  T
Q  129 ------ataaaatccgagggaatatatgtgcctgattttaagactgtgatacagcatttcatattaccttgttcagggaagggattcattagaggggtag 222  Q
          || ||||  || || || ||||||||||||||||||||||| ||||| |||||    || || |||||||||| |||  | || ||||  || |    
T  46188864 gtgtttatgaaatgtgaagggatttatgtgcctgattttaagactgttatacaacatttttgtttgccatgttcagggaggggtgtgataagagaagtgg 46188963  T
Q  223 gaaaatggttgaaacttggtgagagagagactgaagctgcttggatgacactacataggtttggaaaccaatcttcttcatcattgt 309  Q
    ||||| ||||||| |||||||||| ||||| |||| |||||| ||||||||| |||||||||||||| |||||||||||||||||||    
T  46188964 gaaaagggttgaagcttggtgagaaagagattgaacctgctttgatgacacttcataggtttggaaatcaatcttcttcatcattgt 46189050  T

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