View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9083_low_45 (Length: 309)
Name: NF9083_low_45
Description: NF9083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9083_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 20 - 286
Target Start/End: Original strand, 45675227 - 45675493
Alignment:
| Q |
20 |
agattgagagaagtatcctttaacagaacaaaaggaggtaggaagaagnnnnnnnntagacataaaaaattaaagaacagtaacaaaacatgcaagttca |
119 |
Q |
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| T |
45675227 |
agattgagagaagtatcctttaacagaacaaaaggaggtaggaagaagaaaaaaaatagacataaaaaattaaagaacagtaacaaaacatgcaagttca |
45675326 |
T |
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| Q |
120 |
gacgttggacaaacaagttcagaggaatccatgggaccagacacaggggccatttcgtaatcatctactatgtagtgaactcactcggtgcttatctcta |
219 |
Q |
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| T |
45675327 |
gaagttggacaaacaagttcagaggaatccatgtgaccagacacaggggccatttcgtaatcatctactatgaagtgaactcactcggtgcttatctcta |
45675426 |
T |
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| Q |
220 |
tatttccccttcccaaagattttgtactgtgttttctcttattctcaattgaagaaaggagtatgta |
286 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45675427 |
tatttccctttcccaaagattttgtactgtgttttctcttattctcaattgaagaaaggagtatgta |
45675493 |
T |
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