View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9083_low_47 (Length: 302)

Name: NF9083_low_47
Description: NF9083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9083_low_47
NF9083_low_47
[»] chr1 (16 HSPs)
chr1 (19-289)||(48179339-48179609)
chr1 (24-232)||(47873854-47874062)
chr1 (71-231)||(40140972-40141136)
chr1 (77-211)||(2417749-2417886)
chr1 (75-224)||(40027189-40027337)
chr1 (75-232)||(49287413-49287567)
chr1 (17-221)||(33860546-33860750)
chr1 (17-221)||(33920173-33920377)
chr1 (77-212)||(37847219-37847359)
chr1 (21-221)||(45196748-45196954)
chr1 (14-230)||(49440278-49440494)
chr1 (155-237)||(41186128-41186210)
chr1 (21-146)||(49540497-49540622)
chr1 (131-204)||(49540418-49540491)
chr1 (20-53)||(40027131-40027164)
chr1 (77-141)||(37850074-37850138)
[»] chr3 (3 HSPs)
chr3 (20-223)||(14964282-14964485)
chr3 (156-222)||(540434-540500)
chr3 (156-224)||(485609-485677)
[»] chr7 (1 HSPs)
chr7 (71-212)||(32347364-32347505)
[»] chr5 (2 HSPs)
chr5 (71-214)||(31266823-31266969)
chr5 (155-196)||(1204363-1204404)
[»] chr6 (3 HSPs)
chr6 (156-219)||(34606051-34606114)
chr6 (156-219)||(34727328-34727391)
chr6 (156-219)||(33465645-33465708)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 48179339 - 48179609
Alignment:
Q  19 tgtggggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcattac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48179339 tgtggggatatgagagaaactctgtgtatgtcatcggtattttatctgcagtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcattac 48179438  T
Q  119 gcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48179439 gcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttat 48179538  T
Q  219 tgtacaacgtgttatttttcctaaaacaaaaaatttgcttattgtacaccgtttaacttgtggtctctgtg 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  48179539 tgtacaacgtgttatttttcctaaaacaaaaaatttgcttattgtacaccgtttaacctgtggtctctgtg 48179609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 24 - 232
Target Start/End: Original strand, 47873854 - 47874062
Alignment:
Q  24 ggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcattacgcttc 123  Q
    ||||||||||| ||||||||||||| |||| ||  || |||| |  |||| || ||||||||||| ||||||||||||||| ||||||||||||||||||    
T  47873854 ggatatgagagcaactctgtgtatgccatcagttcttcatctacactatgtagagtgtattcaggggatgataaaaaattgtaaaaatgcattacgcttc 47873953  T
Q  124 cagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttattgtac 223  Q
    |||||| ||||||| ||  |||||  ||||  ||||| |||||||| |||| || |||||| || |||| ||||| ||||||||||||||| ||||||||    
T  47873954 cagctcctcatggatcacattccctgatgttggattgttgttttagacatctacgatatgaggttgatttttctccagttgagtaacttgcatattgtac 47874053  T
Q  224 aacgtgtta 232  Q
    | |||||||    
T  47874054 atcgtgtta 47874062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 231
Target Start/End: Original strand, 40140972 - 40141136
Alignment:
Q  71 atgcagtgtgtattcaggagatgataaaaaa-ttgcaaaaatgcattacgcttccagctcttc---atggaacaagttcccacatgtacgattggtgttt 166  Q
    |||||||||||||||||| |||||||||||| || |||||||| || ||| ||||||||| ||   ||||||||  ||| |||||||  |||||||||||    
T  40140972 atgcagtgtgtattcaggcgatgataaaaaaattacaaaaatgtatcacgtttccagctcctccttatggaacagattctcacatgttggattggtgttt 40141071  T
Q  167 taggcatcaacaatatgaagtagattattctctagttgagtaacttgcttattgtacaacgtgtt 231  Q
    ||| |||| ||||||||| ||||||||||||||||||||||||||||| | ||||||| ||||||    
T  40141072 tagacatctacaatatgaggtagattattctctagttgagtaacttgcatgttgtacaccgtgtt 40141136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 77 - 211
Target Start/End: Complemental strand, 2417886 - 2417749
Alignment:
Q  77 tgtgtattcaggagatgataaaaaattgcaaaaatgcattacgcttccagctcttc---atggaacaagttcccacatgtacgattggtgttttaggcat 173  Q
    |||||||||||| ||||||||||||||||||||||| | |||||||||||||| ||   ||||||||  ||| |||||||  |||||||||||||| |||    
T  2417886 tgtgtattcaggggatgataaaaaattgcaaaaatgtagtacgcttccagctcctccgtatggaacagattctcacatgttggattggtgttttagacat 2417787  T
Q  174 caacaatatgaagtagattattctctagttgagtaact 211  Q
    | ||||||||| ||||||||||||  ||||||||||||    
T  2417786 ctacaatatgaggtagattattcttcagttgagtaact 2417749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 75 - 224
Target Start/End: Original strand, 40027189 - 40027337
Alignment:
Q  75 agtgtgtattcaggagatgataaaaaattgcaaaaatgcattacgcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatc 174  Q
    |||||||||||||| |||| ||||||||| |||||||| |||||||||||||||| ||||||||||  |||   |||||  ||||| |||||||| | ||    
T  40027189 agtgtgtattcaggggatggtaaaaaattacaaaaatgtattacgcttccagctcctcatggaacattttctagcatgttggattgatgttttagacctc 40027288  T
Q  175 aacaatatgaagtagattattctctagttgagtaacttgcttattgtaca 224  Q
     || || ||| |||||||||||||| |||||||||||||| |||||||||    
T  40027289 tacgat-tgaggtagattattctcttgttgagtaacttgcatattgtaca 40027337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 75 - 232
Target Start/End: Original strand, 49287413 - 49287567
Alignment:
Q  75 agtgtgtattcaggagatgataaaaaattgcaaaaatgcattacgcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatc 174  Q
    ||||||||||  || ||||||||||||||| |||||||||||| |||||||||||   ||| | ||  |||| ||||||  |||||||| ||||| ||||    
T  49287413 agtgtgtatttcggggatgataaaaaattgaaaaaatgcattatgcttccagctc---atgcagcacattcctacatgtttgattggtgatttagacatc 49287509  T
Q  175 aacaatatgaagtagattattctctagttgagtaacttgcttattgtacaacgtgtta 232  Q
     ||||||||| ||||||||||| |||||||||| |||||  |||| |||| |||||||    
T  49287510 tacaatatgaggtagattattccctagttgagtgacttggatattatacaccgtgtta 49287567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 33860546 - 33860750
Alignment:
Q  17 cctgtggggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcatt 116  Q
    |||||||||||||||||| |||||||||||| |||||  |   || | | |   ||| |||||||||||| ||||||||||||| ||||||||||| |||    
T  33860546 cctgtggggatatgagagcaactctgtgtatatcatcaatcaattttttacaagatgtagtgtgtattcatgagatgataaaaagttgcaaaaatgtatt 33860645  T
Q  117 acgcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgctt 216  Q
    ||| || || || || ||||||||||||| | |||||  ||||||||| ||||   || ||   ||||| |||||||||||||||||||||| | ||| |    
T  33860646 acggtttcaactgttgatggaacaagttctctcatgtttgattggtgtattagatgtctacggaatgaaatagattattctctagttgagtagcctgcat 33860745  T
Q  217 attgt 221  Q
    |||||    
T  33860746 attgt 33860750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 33920377 - 33920173
Alignment:
Q  17 cctgtggggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcatt 116  Q
    |||||||||||||||||| |||||||||||| |||||  |   || | | |   ||| |||||||||||| ||||||||||||| ||||||||||| |||    
T  33920377 cctgtggggatatgagagcaactctgtgtatatcatcaatcaattttttacaagatgtagtgtgtattcatgagatgataaaaagttgcaaaaatgtatt 33920278  T
Q  117 acgcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgctt 216  Q
    ||| || || || || ||||||||||||| | |||||  ||||||||| ||||   || ||   ||||| |||||||||||||||||||||| | ||| |    
T  33920277 acggtttcaactgttgatggaacaagttctctcatgtttgattggtgtattagatgtctacggaatgaaatagattattctctagttgagtagcctgcat 33920178  T
Q  217 attgt 221  Q
    |||||    
T  33920177 attgt 33920173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 37847219 - 37847359
Alignment:
Q  77 tgtgtattcaggagatgataaaaaattgc-----aaaaatgcattacgcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggc 171  Q
    ||||||||||||||||||||| ||||||      |||||||||||||||||| || | | ||||||||||| | ||||| ||  |||||||| ||||| |    
T  37847219 tgtgtattcaggagatgataacaaattgagaaaaaaaaatgcattacgcttctaggtttccatggaacaagattccacaagtttgattggtgatttagac 37847318  T
Q  172 atcaacaatatgaagtagattattctctagttgagtaactt 212  Q
    ||  || ||||||||||||||||| ||||||||||||||||    
T  37847319 atgtacgatatgaagtagattattttctagttgagtaactt 37847359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 221
Target Start/End: Original strand, 45196748 - 45196954
Alignment:
Q  21 tggggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcattacgc 120  Q
    |||||||||||| | || ||| |||||| ||||  | |||||||| |  |||| |||| |||||||||  |||||||||||||||||||| ||||||| |    
T  45196748 tggggatatgagtgcaattctatgtatgacatcaatcttttatctacaatatgtagtgcgtattcagggaatgataaaaaattgcaaaaaagcattacac 45196847  T
Q  121 ttc------cagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgc 214  Q
    |||      |||||| | ||| |||||  |     |||| ||||||||||||||| ||||||||||||||  ||||||||||||||||| ||||||||||    
T  45196848 ttctagttccagctcctgatgcaacaatgtgtttgatgttcgattggtgttttagacatcaacaatatgagatagattattctctagttaagtaacttgc 45196947  T
Q  215 ttattgt 221  Q
     ||||||    
T  45196948 atattgt 45196954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 49440494 - 49440278
Alignment:
Q  14 gaacctgtggggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgc 113  Q
    |||| |||||||||||||||| || ||||| ||||||||| || |||||||| |   ||| |   |||||||| | || ||||||||||  ||||| | |    
T  49440494 gaacatgtggggatatgagagtaattctgtttatgtcatcagtgttttatctacaacatgtatcatgtattcatgggacgataaaaaatcacaaaagtac 49440395  T
Q  114 attacgcttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttg 213  Q
    || |||||||||  || |||||  ||| | | |  ||||| ||||||||||||||| |||| || | ||||||||||||||||||| ||| |||||||||    
T  49440394 atcacgcttccaaatcctcatgatacaggcttctccatgttcgattggtgttttagacatctacgacatgaagtagattattctctggtttagtaacttg 49440295  T
Q  214 cttattgtacaacgtgt 230  Q
    | ||||| |||| ||||    
T  49440294 catattgcacaatgtgt 49440278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 155 - 237
Target Start/End: Original strand, 41186128 - 41186210
Alignment:
Q  155 cgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttattgtacaacgtgttattttt 237  Q
    ||||||||| |||||||||| |||||||||  ||||||||| |||||||||||||||||| |||||||||  |||||| ||||    
T  41186128 cgattggtggtttaggcatctacaatatgagatagattattttctagttgagtaacttgcatattgtacattgtgttactttt 41186210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 49540622 - 49540497
Alignment:
Q  21 tggggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcattacgc 120  Q
    |||||||| ||||| |||||| ||||||||||| || ||  |||| |  |||| |||||||||||||| ||||||||||| || ||||||| |||||       
T  49540622 tggggatacgagagcaactctatgtatgtcatccgtcttggatctacaatatgtagtgtgtattcaggtgatgataaaaagtttcaaaaatacattaaaa 49540523  T
Q  121 ttccagctcttcatggaacaagttcc 146  Q
    ||||||||| ||||| ||||||||||    
T  49540522 ttccagctcctcatgaaacaagttcc 49540497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 49540491 - 49540418
Alignment:
Q  131 tcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttg 204  Q
    ||||||||||||||||  |||||  ||||| ||||||||  ||| || |||||| |||||||||||||||||||    
T  49540491 tcatggaacaagttccttcatgttggattgttgttttagaaatctacgatatgaggtagattattctctagttg 49540418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 40027131 - 40027164
Alignment:
Q  20 gtggggatatgagagaaactctgtgtatgtcatc 53  Q
    ||||||||||||||| ||||||||||||||||||    
T  40027131 gtggggatatgagagtaactctgtgtatgtcatc 40027164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 37850074 - 37850138
Alignment:
Q  77 tgtgtattcaggagatgataaaaaattgcaaaaatgcattacgcttccagctcttcatggaacaa 141  Q
    |||| |||||||  ||||||| |||||| |||||||||||||| ||||| || | ||||||||||    
T  37850074 tgtgcattcagggaatgataacaaattgtaaaaatgcattacgtttccaactttccatggaacaa 37850138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 14964282 - 14964485
Alignment:
Q  20 gtggggatatgagagaaactctgtgtatgtcatcggtattttatctgcggtatgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcattacg 119  Q
    |||||||||||| || |||||||||||||||||| || |||||||| |  |||| ||||||||||| || ||||||||| ||||||||||||||||||||    
T  14964282 gtggggatatgaaagcaactctgtgtatgtcatcagtcttttatctacaatatgtagtgtgtattctggggatgataaacaattgcaaaaatgcattacg 14964381  T
Q  120 cttccagctcttcatggaacaagttcccacatgtacgattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttatt 219  Q
    ||||||||||   ||| |||||| | |   |||   |||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||| ||||    
T  14964382 cttccagctccagatgcaacaaggtgcttgatggtagattggtgttttagacatctacaatatgaagtagattattctctagttgagtaatttgcatatt 14964481  T
Q  220 gtac 223  Q
    ||||    
T  14964482 gtac 14964485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 540500 - 540434
Alignment:
Q  156 gattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttattgta 222  Q
    |||||||| ||||  |||||||||||||| || ||||||||||||| |||||||| || ||||||||    
T  540500 gattggtgctttaaacatcaacaatatgaggtggattattctctagatgagtaacatggttattgta 540434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 485677 - 485609
Alignment:
Q  156 gattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttattgtaca 224  Q
    |||||||| ||||| |||||||||||||| || |||| ||||| || |||||||| || ||||||||||    
T  485677 gattggtgctttagacatcaacaatatgaggtggatttttctccagatgagtaacatggttattgtaca 485609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 71 - 212
Target Start/End: Complemental strand, 32347505 - 32347364
Alignment:
Q  71 atgcagtgtgtattcaggagatgataaaaaattgcaaaaatgcattacgcttccagctcttcatggaacaagttcccacatgtacgattggtgttttagg 170  Q
    |||| |||| |||||||| |||||||||| ||||||||||||||||| ||||||||||| | |||||| ||| |||| || || |||||||||||||||     
T  32347505 atgccgtgtctattcaggggatgataaaagattgcaaaaatgcattatgcttccagctccttatggaaaaagatccctcaagttcgattggtgttttaga 32347406  T
Q  171 catcaacaatatgaagtagattattctctagttgagtaactt 212  Q
    |||| ||||| |||||||||||||||||||||||| ||||||    
T  32347405 catctacaatctgaagtagattattctctagttgaataactt 32347364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 31266823 - 31266969
Alignment:
Q  71 atgcagtgtgtattcaggagatgataaaa---aattgcaaaaatgcattacgcttccagctcttcatggaacaagttcccacatgtacgattggtgtttt 167  Q
    ||||| ||| |||||||| ||||||||||   ||||||||||||||||||| |||||| ||| | || |||||||||||   | || ||| | || ||||    
T  31266823 atgcaatgtctattcaggggatgataaaataaaattgcaaaaatgcattacacttccaactcctaatagaacaagttcctttaagttcgactagtatttt 31266922  T
Q  168 aggcatcaacaatatgaagtagattattctctagttgagtaacttgc 214  Q
    ||  ||| || || |||||||||||||||||||||||||||| ||||    
T  31266923 agaaatctacgatctgaagtagattattctctagttgagtaatttgc 31266969  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 1204404 - 1204363
Alignment:
Q  155 cgattggtgttttaggcatcaacaatatgaagtagattattc 196  Q
    ||||||||||||||| |||||||| ||||| |||||||||||    
T  1204404 cgattggtgttttagacatcaacactatgaggtagattattc 1204363  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 34606051 - 34606114
Alignment:
Q  156 gattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttatt 219  Q
    |||||||||||||| |||| ||||||||| ||||||||| |||| |||||||| | ||||||||    
T  34606051 gattggtgttttagacatctacaatatgaggtagattatactctcgttgagtagcatgcttatt 34606114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 34727328 - 34727391
Alignment:
Q  156 gattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttatt 219  Q
    |||||||||||||| |||| ||||||||| ||||||||| |||| |||||||| | ||||||||    
T  34727328 gattggtgttttagacatctacaatatgaggtagattatactctcgttgagtagcatgcttatt 34727391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 33465708 - 33465645
Alignment:
Q  156 gattggtgttttaggcatcaacaatatgaagtagattattctctagttgagtaacttgcttatt 219  Q
    |||||||||||||| |||| ||||||||| ||||||||| ||||  ||||||| | ||||||||    
T  33465708 gattggtgttttagacatctacaatatgaggtagattatactctttttgagtagcatgcttatt 33465645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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