View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9083_low_49 (Length: 301)
Name: NF9083_low_49
Description: NF9083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9083_low_49 |
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| [»] scaffold0015 (5 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 301
Target Start/End: Complemental strand, 11315 - 11030
Alignment:
| Q |
16 |
caattcctttaactgatatttctttggagccatagatgagtgttgaatttgatcctctatccttggatatgcatcttcttgaacctcatcacttcttttc |
115 |
Q |
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| T |
11315 |
caattcctttaactgatatttctttggagccatagacgagtgttgaatttgatcctctatccttggatatgcatcttcttgaacctcatcgcttcttttc |
11216 |
T |
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| Q |
116 |
cttcgacaataaaggaataaaaagacgaatccacctataagtatcaccaatggaattataatccaaataatccacaagagttttcctttactaccaatat |
215 |
Q |
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| T |
11215 |
cttcgacaataaaggaataaaaagacgaatccacctataagtatcaccaatggaattataatccaaataatccacaagagttttcctttactaccaatat |
11116 |
T |
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| Q |
216 |
caacaccattgaattcccatcttgttacacagtttaactccgtgtaattgcttgttgaagccgagaaaccaacataaacctcttgt |
301 |
Q |
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| T |
11115 |
caacaccattgaattcccatcttgttacacagtttaactccgtgtaattgcttgttgaagccgagaaaccaacataaacctcttgt |
11030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 210 - 301
Target Start/End: Original strand, 19621 - 19712
Alignment:
| Q |
210 |
caatatcaacaccattgaattcccatcttgttacacagtttaactccgtgtaattgcttgttgaagccgagaaaccaacataaacctcttgt |
301 |
Q |
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| T |
19621 |
caatatctacaccattgaattcccatctttttacacagtttaactccgtgtaattgcttgttgaagcggagaaaccgacataaacctcttgt |
19712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 19422 - 19510
Alignment:
| Q |
14 |
atcaattcctttaactgatatttctttggagccatagatgagtgttgaatttgatcctctatccttggatatgcatcttcttgaacctc |
102 |
Q |
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| T |
19422 |
atcaattcctttagtcgatatttctttggagccatagatgagtgttgaatttgatcctcaatccttggatatgtatcttcttgaacctc |
19510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 37001 - 36917
Alignment:
| Q |
14 |
atcaattcctttaactgatatttctttggagccatagatgagtgttgaatttgatcctctatccttggatatgcatcttcttgaa |
98 |
Q |
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| T |
37001 |
atcaattcctttagtcgatatttctttggtgccattgacgagtactgaatttgatcctctatccttggatatgtatcttcttgaa |
36917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 301
Target Start/End: Complemental strand, 36799 - 36708
Alignment:
| Q |
210 |
caatatcaacaccattgaattcccatcttgttacacagtttaactccgtgtaattgcttgttgaagccgagaaaccaacataaacctcttgt |
301 |
Q |
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| T |
36799 |
caatatctaccccgttgaattcccatgctcttacactgtttgtctctgtggtattgcttgttgaagcagagaatccgacataaacctcttgt |
36708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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