View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9083_low_51 (Length: 296)

Name: NF9083_low_51
Description: NF9083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9083_low_51
NF9083_low_51
[»] chr5 (19 HSPs)
chr5 (20-284)||(36445467-36445731)
chr5 (23-284)||(36435567-36435807)
chr5 (22-218)||(36467978-36468162)
chr5 (215-284)||(36467936-36468005)
chr5 (28-102)||(36492969-36493043)
chr5 (117-198)||(36435962-36436043)
chr5 (138-202)||(36435880-36435944)
chr5 (108-201)||(36435980-36436073)
chr5 (56-97)||(36476148-36476189)
chr5 (159-202)||(36445822-36445865)
chr5 (108-186)||(36435875-36435953)
chr5 (56-96)||(36493164-36493204)
chr5 (159-202)||(36468228-36468271)
chr5 (227-284)||(36411203-36411260)
chr5 (117-186)||(36435953-36436022)
chr5 (165-202)||(36475908-36475945)
chr5 (170-210)||(36411253-36411293)
chr5 (138-202)||(36436000-36436064)
chr5 (89-145)||(36475995-36476051)


Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 284
Target Start/End: Complemental strand, 36445731 - 36445467
Alignment:
Q  20 cacggtgctgctgaatctgttgccgcgcaaactgaggaaaagactaatgaagtaaatgatgctaaatatggtggtggtagttacaaccatggtggaagtt 119  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36445731 cacggtgctgctgaatctgttgccgtgcaaactgaggaaaagactaatgaagtaaatgatgccaaatatggtggtggtagttacaaccatggtggaagtt 36445632  T
Q  120 acaaccatggtggaggtagttacaaccatggaggaggtagttaccaccacggtggaggtggttacaaccacggtggaggtggtcacggtggacacggtgg 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  36445631 acaaccatggtggaggtagttacaaccatggaggaggtagttaccaccacggtggaggtggttacaaccacggtggaggtggacacggaggacacggtgg 36445532  T
Q  220 aggaggccacggtggtcacggtgccgagcaaactgaggacaaaactcaaaactgatcataatgat 284  Q
    ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36445531 aggtggtcacggtggtcacggtgccgagcaaactgaggacaaaactcaaaactgatcataatgat 36445467  T

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Target: chr5; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 23 - 284
Target Start/End: Complemental strand, 36435807 - 36435567
Alignment:
Q  23 ggtgctgctgaatctgttgccgcgcaaactgaggaaaagactaatgaagtaaatgatgctaaatatggtggtggtagttacaaccatggtggaagttaca 122  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||                     ||||    
T  36435807 ggtgctgctgaatctgttgccgtgcaaactgaggaaaagactaatgaagtaaatgatgccaaatatggtggtggt---------------------taca 36435729  T
Q  123 accatggtggaggtagttacaaccatggaggaggtagttaccaccacggtggaggtggttacaaccacggtggaggtggtcacggtggacacggtggagg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||    
T  36435728 accatggtggaggtagttacaaccatggaggaggtagttaccaccacggtggaggtggttacaaccacggtggaggtggacacgggggacatggtggagg 36435629  T
Q  223 aggccacggtggtcacggtgccgagcaaactgaggacaaaactcaaaactgatcataatgat 284  Q
     || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36435628 tggtcacggtggtcacggtgccgagcaaactgaggacaaaactcaaaactgatcataatgat 36435567  T

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Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 36468162 - 36467978
Alignment:
Q  22 cggtgctgctgaatctgttgccgcgcaaactgaggaaaagactaatgaagtaaatgatgctaaatatggtggtggtagttacaaccatggtggaagttac 121  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | | ||||||||||             ||||| |||| |    
T  36468162 cggtgctgctgaatctgttgccgtgcaaactgaggaaaagactaatgaagtaaatgatgccagaaatggtggtgga------------ggtggtagtttc 36468075  T
Q  122 aaccatggtggaggtagttacaaccatggaggaggtagttaccaccacggtggaggtggttacaaccacggtggaggtggtcacggtggacacggtg 218  Q
    ||| | ||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||| |||||| | |||||||    
T  36468074 aacaaaggtggagctagttacaaccatggacgaggtagttaccaccacggttgaggtggttacaaccatggtggaggtggacacggtagtcacggtg 36467978  T

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Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 215 - 284
Target Start/End: Complemental strand, 36468005 - 36467936
Alignment:
Q  215 ggtggaggaggccacggtggtcacggtgccgagcaaactgaggacaaaactcaaaactgatcataatgat 284  Q
    |||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36468005 ggtggaggtggacacggtagtcacggtgccgagcaaactgaggacaaaactcaaaactgatcataatgat 36467936  T

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Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 36493043 - 36492969
Alignment:
Q  28 tgctgaatctgttgccgcgcaaactgaggaaaagactaatgaagtaaatgatgctaaatatggtggtggtagtta 102  Q
    |||||||| ||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  36493043 tgctgaatttgttgccgtccaaactgaggaaaagactaatgaagtaaatgatgccaaatatggtggtggtggtta 36492969  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 36436043 - 36435962
Alignment:
Q  117 gttacaaccatggtggaggtagttacaaccatggaggaggtagttaccaccacggtggaggtggttacaaccacggtggagg 198  Q
    |||||||| | ||||||||| ||||||||||||| || ||| ||||| || ||||||||||||| |||||||| ||||||||    
T  36436043 gttacaacaacggtggaggtggttacaaccatggtggtggtggttacaacaacggtggaggtggctacaaccatggtggagg 36435962  T

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Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 36435944 - 36435880
Alignment:
Q  138 gttacaaccatggaggaggtagttaccaccacggtggaggtggttacaaccacggtggaggtggt 202  Q
    |||||||||| || |||||| ||||| ||||||||||||||||||||||||| || |||||||||    
T  36435944 gttacaaccacggcggaggtggttacaaccacggtggaggtggttacaaccatggcggaggtggt 36435880  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 201
Target Start/End: Complemental strand, 36436073 - 36435980
Alignment:
Q  108 atggtggaagttacaaccatggtggaggtagttacaaccatggaggaggtagttaccaccacggtggaggtggttacaaccacggtggaggtgg 201  Q
    |||||||| |||| ||||| || || ||| |||||||| | || |||||| ||||| |||| ||||| |||||||||||| |||||||||||||    
T  36436073 atggtggaggttataaccacggcggtggtggttacaacaacggtggaggtggttacaaccatggtggtggtggttacaacaacggtggaggtgg 36435980  T

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Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 36476189 - 36476148
Alignment:
Q  56 gaaaagactaatgaagtaaatgatgctaaatatggtggtggt 97  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  36476189 gaaaagactaatgaagtaaatgatgccaaatatggtggtggt 36476148  T

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Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 36445865 - 36445822
Alignment:
Q  159 gttaccaccacggtggaggtggttacaaccacggtggaggtggt 202  Q
    |||||||| |||||||||||||||||||||| ||||||||||||    
T  36445865 gttaccacaacggtggaggtggttacaaccatggtggaggtggt 36445822  T

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Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 186
Target Start/End: Complemental strand, 36435953 - 36435875
Alignment:
Q  108 atggtggaagttacaaccatggtggaggtagttacaaccatggaggaggtagttaccaccacggtggaggtggttacaa 186  Q
    |||||||  |||||||||| || |||||| |||||||||| || |||||| ||||| |||| || ||||||||||||||    
T  36435953 atggtggtggttacaaccacggcggaggtggttacaaccacggtggaggtggttacaaccatggcggaggtggttacaa 36435875  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 36493204 - 36493164
Alignment:
Q  56 gaaaagactaatgaagtaaatgatgctaaatatggtggtgg 96  Q
    |||||||||||||||||||| ||||| ||||||||||||||    
T  36493204 gaaaagactaatgaagtaaacgatgccaaatatggtggtgg 36493164  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 36468271 - 36468228
Alignment:
Q  159 gttaccaccacggtggaggtggttacaaccacggtggaggtggt 202  Q
    |||||||| ||||||||||||||||| || ||||||||||||||    
T  36468271 gttaccacaacggtggaggtggttaccacaacggtggaggtggt 36468228  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 36411260 - 36411203
Alignment:
Q  227 cacggtggtcacggtgccgagcaaactgaggacaaaactcaaaactgatcataatgat 284  Q
    ||||||||||| ||||||| | ||||||||||| |||||| ||||| ||| |||||||    
T  36411260 cacggtggtcatggtgccgtggaaactgaggacgaaactcgaaactaatcgtaatgat 36411203  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 36436022 - 36435953
Alignment:
Q  117 gttacaaccatggtggaggtagttacaaccatggaggaggtagttaccaccacggtggaggtggttacaa 186  Q
    |||||||||||||||| ||| |||||||| | || |||||| | ||| |||| |||||||| ||||||||    
T  36436022 gttacaaccatggtggtggtggttacaacaacggtggaggtggctacaaccatggtggaggaggttacaa 36435953  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 36475945 - 36475908
Alignment:
Q  165 accacggtggaggtggttacaaccacggtggaggtggt 202  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  36475945 accatggtggaggcggttacaaccacggtggaggtggt 36475908  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 36411293 - 36411253
Alignment:
Q  170 ggtggaggtggttacaaccacggtggaggtggtcacggtgg 210  Q
    |||||||||||| ||||||||||| || |||||||||||||    
T  36411293 ggtggaggtggtcacaaccacggtagacgtggtcacggtgg 36411253  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 36436064 - 36436000
Alignment:
Q  138 gttacaaccatggaggaggtagttaccaccacggtggaggtggttacaaccacggtggaggtggt 202  Q
    |||| ||||| || || ||| ||||| || |||||||||||||||||||||| ||||| ||||||    
T  36436064 gttataaccacggcggtggtggttacaacaacggtggaggtggttacaaccatggtggtggtggt 36436000  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 36476051 - 36475995
Alignment:
Q  89 ggtggtggtagttacaaccatggtggaagttacaaccatggtggaggtagttacaac 145  Q
    ||||||||| | |||||| |||||||  | |||||||||||||||||| ||||||||    
T  36476051 ggtggtggtggatacaacaatggtggtggatacaaccatggtggaggtggttacaac 36475995  T

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