View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9083_low_53 (Length: 290)

Name: NF9083_low_53
Description: NF9083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9083_low_53
NF9083_low_53
[»] chr1 (1 HSPs)
chr1 (7-290)||(10797877-10798160)


Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 7 - 290
Target Start/End: Complemental strand, 10798160 - 10797877
Alignment:
Q  7 gagaagcagagaaataaatgcttacagtgcattatatagcgtatgaattttgatgttcaaataacacgactatttcttaatgctcaagctctacattatt 106  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10798160 gagaaacagagaaataaatgctcacagtgcattatatagcgtatgaattttgatgttcaaataacacgactatttcttaatgctcaagctctacattatt 10798061  T
Q  107 tttccagtatatctatctcatcatgggcaaggagcttctaaggacaatttttgactttttaaggtttatagttggcttaggtcagactggtcgaattaag 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  10798060 tttccagtatatctatctcatcatgggcaaggagcttctaaggacaatttttgactttttaaggtttatagttggcttaggtaagactagtcgaattaag 10797961  T
Q  207 cgtatcttggtaagattgggaaaattgtacaagagtacaaaacagaggaaaatcaccgatgagcactttttggagaaggccatt 290  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10797960 cgtatcttggtaagattgggaaaattgtacaagagtacaaaacggaggaaaatcaccgatgagcactttttggagaaggccatt 10797877  T

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