View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9083_low_58 (Length: 278)
Name: NF9083_low_58
Description: NF9083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9083_low_58 |
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| [»] chr4 (10 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0534 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 36403377 - 36403642
Alignment:
| Q |
13 |
ctgtgtctgtttgagtatttctattttctcctaataaaatgaaaatgaggtatgaaagaggaactgatcaatggagtctcttgaaaatcttctctgcaag |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36403377 |
ctgtgtctgtttgagtatttctattttctcctaataaaatgaaaatgaggtatgaaagaggaactgatcaatggagtctcttgaaaatcttctctgcaag |
36403476 |
T |
|
| Q |
113 |
atgctggttttgcatatctattttctactcctcacattctctttttgctcttgttcttcagataccatatctatcgacaaaaccttaagagatggtgaac |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36403477 |
atgctggttttgcatatctattttctactcctcacattctctttttgctcttgttcttctgataccatatctatcgacaaaaccttaagagatggtgaac |
36403576 |
T |
|
| Q |
213 |
ttcttgtttctaaatctaaaacctttgctcttggattcttcactccaggaaagtccgcctctcgct |
278 |
Q |
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| T |
36403577 |
ttcttgtttctaaatctaaaacctttgctcttggattcttcactccaggaaagtccgcctctcgct |
36403642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 137 - 278
Target Start/End: Original strand, 36396568 - 36396709
Alignment:
| Q |
137 |
ctactcctcacattctctttttgctcttgttcttcagataccatatctatcgacaaaaccttaagagatggtgaacttcttgtttctaaatctaaaacct |
236 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36396568 |
ctacttctcacattctctttttgctcttgttcttctgataccatatctattgacaaaaccttaagagatggtgaacttcttgtttctaaatctaaaacat |
36396667 |
T |
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| Q |
237 |
ttgctcttggattcttcactccaggaaagtccgcctctcgct |
278 |
Q |
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| T |
36396668 |
ttgctcttggattcttcactccaggaaagtccacctctcgct |
36396709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 143 - 264
Target Start/End: Original strand, 36386791 - 36386912
Alignment:
| Q |
143 |
ctcacattctctttttgctcttgttcttcagataccatatctatcgacaaaaccttaagagatggtgaacttcttgtttctaaatctaaaacctttgctc |
242 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| ||||| || | ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36386791 |
ctcacattctctttttgctcttgttcttctgataccatatctattcacaaacccctgagagatggtgaacttcttgtttctaaatctaaaacatttgctc |
36386890 |
T |
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| Q |
243 |
ttggattcttcactccaggaaa |
264 |
Q |
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|||||||||||||||||||||| |
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| T |
36386891 |
ttggattcttcactccaggaaa |
36386912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 143 - 278
Target Start/End: Original strand, 36410824 - 36410959
Alignment:
| Q |
143 |
ctcacattctctttttgctcttgttcttcagataccatatctatcgacaaaaccttaagagatggtgaacttcttgtttctaaatctaaaacctttgctc |
242 |
Q |
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||||| || ||||||||| |||||||||| ||||||||| |||| ||||| || ||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
36410824 |
ctcaccttatctttttgcccttgttcttctgataccataactattcacaaacccataagagatggtgaacttctcatttctaaatctaaaacatttgctc |
36410923 |
T |
|
| Q |
243 |
ttggattcttcactccaggaaagtccgcctctcgct |
278 |
Q |
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|||||||||||||||||||||||||| ||||||||| |
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| T |
36410924 |
ttggattcttcactccaggaaagtccacctctcgct |
36410959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 143 - 278
Target Start/End: Original strand, 36416155 - 36416290
Alignment:
| Q |
143 |
ctcacattctctttttgctcttgttcttcagataccatatctatcgacaaaaccttaagagatggtgaacttcttgtttctaaatctaaaacctttgctc |
242 |
Q |
| |
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||||| || ||||||||| |||||||||| ||||||||| |||| ||||| || ||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
36416155 |
ctcaccttatctttttgcccttgttcttctgataccataactattcacaaacccataagagatggtgaacttctcatttctaaatctaaaacatttgctc |
36416254 |
T |
|
| Q |
243 |
ttggattcttcactccaggaaagtccgcctctcgct |
278 |
Q |
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|||||||||||||||||||||||||| ||||||||| |
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| T |
36416255 |
ttggattcttcactccaggaaagtccacctctcgct |
36416290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 143 - 278
Target Start/End: Original strand, 36424990 - 36425125
Alignment:
| Q |
143 |
ctcacattctctttttgctcttgttcttcagataccatatctatcgacaaaaccttaagagatggtgaacttcttgtttctaaatctaaaacctttgctc |
242 |
Q |
| |
|
||||| || ||||||||| |||||||||| ||||||||| |||| ||||| || ||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
36424990 |
ctcaccttatctttttgcccttgttcttctgataccataactattcacaaacccataagagatggtgaacttctcatttctaaatctaaaacatttgctc |
36425089 |
T |
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| Q |
243 |
ttggattcttcactccaggaaagtccgcctctcgct |
278 |
Q |
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|
|||||||||||||||||||||||||| ||||||||| |
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| T |
36425090 |
ttggattcttcactccaggaaagtccacctctcgct |
36425125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 149 - 278
Target Start/End: Original strand, 36372841 - 36372970
Alignment:
| Q |
149 |
ttctctttttgctcttgttcttcagataccatatctatcgacaaaaccttaagagatggtgaacttcttgtttctaaatctaaaacctttgctcttggat |
248 |
Q |
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||||| ||||||||||||||| | |||| |||||||| |||||| | ||||||||||||| ||||||||||| ||||| ||||| ||||||||||||| |
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| T |
36372841 |
ttctccttttgctcttgttctactgatatcatatctactgacaaaccaataagagatggtgagcttcttgtttccaaatccaaaacttttgctcttggat |
36372940 |
T |
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| Q |
249 |
tcttcactccaggaaagtccgcctctcgct |
278 |
Q |
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|||||||||||| ||| ||| | ||||||| |
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| T |
36372941 |
tcttcactccagcaaaatccacatctcgct |
36372970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 198 - 278
Target Start/End: Original strand, 36368274 - 36368354
Alignment:
| Q |
198 |
taagagatggtgaacttcttgtttctaaatctaaaacctttgctcttggattcttcactccaggaaagtccgcctctcgct |
278 |
Q |
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||||||||||||| ||||| | |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36368274 |
taagagatggtgagattcttatatctaaatctaaaacatttgctcttggattcttcactccaggaaagtccacctctcgct |
36368354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 151 - 278
Target Start/End: Original strand, 36432855 - 36432982
Alignment:
| Q |
151 |
ctctttttgctcttgttcttcagataccatatctatcgacaaaaccttaagagatggtgaacttcttgtttctaaatctaaaacctttgctcttggattc |
250 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||| | |||| | |||||||||||||| ||||| ||||||||||||||| ||| ||||||||||| |
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| T |
36432855 |
ctctttttgctcttgttcttctgatactatatctactgtcaaaccattaagagatggtgagcttctgatttctaaatctaaaatgttttctcttggattc |
36432954 |
T |
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| Q |
251 |
ttcactccaggaaagtccgcctctcgct |
278 |
Q |
| |
|
||| || |||||| ||| | ||||||| |
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| T |
36432955 |
ttcgctaaaggaaaatccacatctcgct |
36432982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 202 - 268
Target Start/End: Complemental strand, 55676660 - 55676594
Alignment:
| Q |
202 |
agatggtgaacttcttgtttctaaatctaaaacctttgctcttggattcttcactccaggaaagtcc |
268 |
Q |
| |
|
||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
55676660 |
agatggtgagattcttatatctaaatctaaaacctttgctcttggattcttcactccagtaaagtcc |
55676594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 221 - 278
Target Start/End: Complemental strand, 34712509 - 34712452
Alignment:
| Q |
221 |
tctaaatctaaaacctttgctcttggattcttcactccaggaaagtccgcctctcgct |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |
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|
| T |
34712509 |
tctaaatctaaaacctttgctcttggattcatcactccagtaaagtccacctctcgct |
34712452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0534 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0534
Description:
Target: scaffold0534; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 11083 - 11046
Alignment:
| Q |
149 |
ttctctttttgctcttgttcttcagataccatatctat |
186 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |
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| T |
11083 |
ttctctttttgctcttgttcttctgataccatatctat |
11046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 186
Target Start/End: Original strand, 42772643 - 42772680
Alignment:
| Q |
149 |
ttctctttttgctcttgttcttcagataccatatctat |
186 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |
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|
| T |
42772643 |
ttctctttttgctcttgttcttctgataccatatctat |
42772680 |
T |
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