View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9083_low_66 (Length: 254)
Name: NF9083_low_66
Description: NF9083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9083_low_66 |
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| [»] chr3 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 254
Target Start/End: Complemental strand, 32832662 - 32832416
Alignment:
| Q |
8 |
aagcagagagattctgtcaaatggttggtatcctggtaatgaaaaatcaaagttgcctcttaactgcatctttaggatgggaggtgcagcaattcttctc |
107 |
Q |
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| T |
32832662 |
aagcacagagattctgtcaaatggttggtatcccggtaaagaaagatcaaagttgcatcttaactgtacctttagaatgggaagtgcagcaattcttctc |
32832563 |
T |
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| Q |
108 |
tcaaacaaaaaagaagcaagtaaaactgcaaaatacaagttagttaggtcgcttagaacacaaagaatctttgatgacaaggcttatttttcttgtataa |
207 |
Q |
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| T |
32832562 |
tcaaacaaaaaagaagcaagtaaaaccgcaaaatacaagttagttaggtcgcttagaacacaaagagcctttgatgacaaggcttatttttcttgtagaa |
32832463 |
T |
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| Q |
208 |
gggaagaagattcagatggaaaacttggggtgacaatcactaaagac |
254 |
Q |
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| T |
32832462 |
gggaagaagattcagatggaaaacttggggtgacactcaataaagac |
32832416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 254
Target Start/End: Complemental strand, 32845943 - 32845697
Alignment:
| Q |
8 |
aagcagagagattctgtcaaatggttggtatcctggtaatgaaaaatcaaagttgcctcttaactgcatctttaggatgggaggtgcagcaattcttctc |
107 |
Q |
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| T |
32845943 |
aagcacagagattctgtcaaatggttggtatcccggtaaagaaagatcaaagttgcatcttaactgtacctttagaatgggaagtgcagcaattcttctc |
32845844 |
T |
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| Q |
108 |
tcaaacaaaaaagaagcaagtaaaactgcaaaatacaagttagttaggtcgcttagaacacaaagaatctttgatgacaaggcttatttttcttgtataa |
207 |
Q |
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| T |
32845843 |
tcaaacaaaaaagaagcaagtaaaaccgcaaaatacaagttagttaggtcgcttagaacacaaagagcctttgatgacaaggcttatttttcttgtagaa |
32845744 |
T |
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| Q |
208 |
gggaagaagattcagatggaaaacttggggtgacaatcactaaagac |
254 |
Q |
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| T |
32845743 |
gggaagaagattcagatggaaaacttggggtgacactcaataaagac |
32845697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 8 - 254
Target Start/End: Original strand, 17931981 - 17932227
Alignment:
| Q |
8 |
aagcagagagattctgtcaaatggttggtatcctggtaatgaaaaatcaaagttgcctcttaactgcatctttaggatgggaggtgcagcaattcttctc |
107 |
Q |
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| T |
17931981 |
aagcacagagattttgtcaaatggttggtatcccggtaaagaaagatcaaagttgcatcttaactgtagctttagaatgggtagtgcagcaattcttctc |
17932080 |
T |
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| Q |
108 |
tcaaacaaaaaagaagcaagtaaaactgcaaaatacaagttagttaggtcgcttagaacacaaagaatctttgatgacaaggcttatttttcttgtataa |
207 |
Q |
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| T |
17932081 |
tcaaacaaaaaagaagcaagtaaaaccgcaaaatacaagttagttaggtcgcttagaacacaaagagcctttgatgacaaggcttattttgcttgtagaa |
17932180 |
T |
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| Q |
208 |
gggaagaagattcagatggaaaacttggggtgacaatcactaaagac |
254 |
Q |
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| T |
17932181 |
gggaagaagattcagatggaatacttggggtgacactcaataaagac |
17932227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 46188503 - 46188737
Alignment:
| Q |
8 |
aagcagagagattctgtcaaatggttggtatcctggtaatgaaaaatcaaagttgcctcttaactgcatctttaggatgggaggtgcagcaattcttctc |
107 |
Q |
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||||| ||||||| |||| | ||||||||||| ||||| |||||||||||||||| | ||||||| ||||||| |||||| |||||||||||||||| |
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| T |
46188503 |
aagcacagagattttgtcccacggttggtatccaggtaaggaaaaatcaaagttgcttattaactgtctctttagaatgggaagtgcagcaattcttctt |
46188602 |
T |
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| Q |
108 |
tcaaacaaaaaagaagcaagtaaaactgcaaaatacaagttagttaggtcgcttagaacacaaagaatctttgatgacaaggcttatttttcttgtataa |
207 |
Q |
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||||||||||||||||||||||||| ||||||||| |||| ||||| | ||||||||||||||| |||||||| || |||||||| || ||||||| |
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| T |
46188603 |
tcaaacaaaaaagaagcaagtaaaaatgcaaaatatttgttacttaggacacttagaacacaaagagcttttgatgataaagcttatttatcctgtataa |
46188702 |
T |
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| Q |
208 |
gggaagaagattcagatggaaaacttggggtgaca |
242 |
Q |
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| T |
46188703 |
gggaagaagattcagatggaaaacttggggtgaca |
46188737 |
T |
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