View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9083_low_69 (Length: 237)

Name: NF9083_low_69
Description: NF9083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9083_low_69
NF9083_low_69
[»] chr6 (2 HSPs)
chr6 (14-169)||(32679640-32679795)
chr6 (96-143)||(32679630-32679676)
[»] chr3 (2 HSPs)
chr3 (14-132)||(2230492-2230609)
chr3 (135-214)||(2230576-2230655)
[»] chr2 (2 HSPs)
chr2 (14-107)||(28136025-28136113)
chr2 (134-214)||(28135955-28136035)
[»] chr8 (2 HSPs)
chr8 (18-79)||(44806734-44806795)
chr8 (134-201)||(44806806-44806873)


Alignment Details
Target: chr6 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 14 - 169
Target Start/End: Complemental strand, 32679795 - 32679640
Alignment:
Q  14 atatggagtctctttcttcatgtagctaagctgttatgatgtgttttacatgatatttgagataacaaacaagtattgttggttttcatcctttgtgggt 113  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  32679795 atatggagtctctttcttcatgtagctaagctgttaggatgtgttttacatgatatttaagataacaaacaagtattgttggttttcatcctttatgggt 32679696  T
Q  114 tgtacctgacttctaaaccttttcatcctttatggttgtacctgacttctaaacct 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32679695 tgtacctgacttctaaaccttttcatcctttatggttgtacctgacttctaaacct 32679640  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 143
Target Start/End: Complemental strand, 32679676 - 32679630
Alignment:
Q  96 ttttcatcctttgtgggttgtacctgacttctaaaccttttcatcctt 143  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||    
T  32679676 ttttcatcctttatgg-ttgtacctgacttctaaaccttttcatcctt 32679630  T

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Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 2230492 - 2230609
Alignment:
Q  14 atatggagtctctttcttcatgtagctaagctgttatgatgtgttttacatgatatttgagataacaaacaagtattgttggttttcatcctttgtgggt 113  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| || |||| | ||  |||||||||| | | |    
T  2230492 atatggagtctctttcttcatgtggctaagctgttatgatgtgttttacatgatatttgagatagcaaataaatattttcggccttcatccttt-ttgat 2230590  T
Q  114 tgtacctgacttctaaacc 132  Q
    |||||||| ||||||||||    
T  2230591 tgtacctggcttctaaacc 2230609  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 2230576 - 2230655
Alignment:
Q  135 ttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatccacatattattattc 214  Q
    |||||||||| || ||||||||| |||||||||| |||||| ||||||||||||||||| ||||||| ||||||||||||    
T  2230576 ttcatcctttttgattgtacctggcttctaaaccaatcaccagaggccttaagtttttttatatccatatattattattc 2230655  T

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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 28136113 - 28136025
Alignment:
Q  14 atatggagtctctttcttcatgtagctaagctgttatgatgtgttttacatgatatttgagataacaaacaagtattgttggttttcatccttt 107  Q
    |||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  28136113 atatggagtctctttcttcatgtagct-----gttatgatgtgttttacatgatatttgagataacaaataagtattgttggctttcatccttt 28136025  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 214
Target Start/End: Complemental strand, 28136035 - 28135955
Alignment:
Q  134 tttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatccacatattattattc 214  Q
    ||||||||||| |  ||||||| | |||||||||| |||||| ||| ||||| ||||||||||||||  ||||||||||||    
T  28136035 tttcatccttttttattgtacccggcttctaaaccaatcaccagagtccttatgttttttcatatccctatattattattc 28135955  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 44806734 - 44806795
Alignment:
Q  18 ggagtctctttcttcatgtagctaagctgttatgatgtgttttacatgatatttgagataac 79  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44806734 ggagtctctttcgtcaagtagctaagctgttatgatgtgttttacatgatatttgagataac 44806795  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 44806806 - 44806873
Alignment:
Q  134 tttcatcctttatggttgtacctgacttctaaacctatcaccggaggccttaagttttttcatatcca 201  Q
    |||||| |||| || ||||||| | |||||||||| |||||| |||| ||||||||||||||||||||    
T  44806806 tttcattctttttgattgtacccggcttctaaaccaatcaccagaggacttaagttttttcatatcca 44806873  T

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