View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9083_low_70 (Length: 236)
Name: NF9083_low_70
Description: NF9083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9083_low_70 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 26087801 - 26087586
Alignment:
| Q |
11 |
attatactgaaaaattaaagcttcaaacatgaacacaaatggcatatattgttttaaccgattgaaagctgcagctgaagcaggtgatatagatctcctc |
110 |
Q |
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| T |
26087801 |
attatactgaaaaattaaagcttcaaacatgaacacaaatggcatatattgttttaaccgattgaaaggtgcagctgaagcaggtgatatagatctcctc |
26087702 |
T |
|
| Q |
111 |
tacacagtaattcaagatgatccatacattttggagcgcatagatttaataccatttgttgaaactcctttacatacggctgcatctatgggtcatcttc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26087701 |
tacacagtaattcaagatgatccatacattttggagcgtatagatttaataccatttgttgaaactcctttacatacggctgcatctatgggtcatcttc |
26087602 |
T |
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| Q |
211 |
aatttgccactcaaat |
226 |
Q |
| |
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||||||||||| |||| |
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| T |
26087601 |
aatttgccactgaaat |
26087586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 7e-67; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 29 - 221
Target Start/End: Original strand, 28865031 - 28865223
Alignment:
| Q |
29 |
agcttcaaacatgaacacaaatggcatatattgttttaaccgattgaaagctgcagctgaagcaggtgatatagatctcctctacacagtaattcaagat |
128 |
Q |
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| T |
28865031 |
agcttcaaacatgaactcaaatgccatatatggttttaaccgaatgaatgctgcagctcatgcaggtgatgtaaatctcctctacacagtaattcaagat |
28865130 |
T |
|
| Q |
129 |
gatccatacattttggagcgcatagatttaataccatttgttgaaactcctttacatacggctgcatctatgggtcatcttcaatttgccact |
221 |
Q |
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| T |
28865131 |
gatccatacgttttggagcgtatagatttaataccatttgttgaaactcctttacatatcgctgcatctatgggtcaccttccttttgccact |
28865223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 69 - 219
Target Start/End: Original strand, 30647919 - 30648069
Alignment:
| Q |
69 |
cgattgaaagctgcagctgaagcaggtgatatagatctcctctacacagtaattcaagatgatccatacattttggagcgcatagatttaataccatttg |
168 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
30647919 |
cgattgaatgctgcagctgaagcaggtgatatagatctcctctacacagtaattcaagatgatccatacattttggagcatatagattcaataccatttg |
30648018 |
T |
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| Q |
169 |
ttgaaactcctttacatacggctgcatctatgggtcatcttcaatttgcca |
219 |
Q |
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|||||||||||||||||| |||||||| ||||||||| || | ||||||| |
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| T |
30648019 |
ttgaaactcctttacatattgctgcatccatgggtcatattgactttgcca |
30648069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 67 - 221
Target Start/End: Original strand, 14726346 - 14726500
Alignment:
| Q |
67 |
accgattgaaagctgcagctgaagcaggtgatatagatctcctctacacagtaattcaagatgatccatacattttggagcgcatagatttaataccatt |
166 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| | || |
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| T |
14726346 |
accgattgaaagctgcagctctaacaggtgatatagatctcctctacacagtaattcaagatgatccatccattttggagcatatagatttaataacttt |
14726445 |
T |
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| Q |
167 |
tgttgaaactcctttacatacggctgcatctatgggtcatcttcaatttgccact |
221 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| | ||||||||| |
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| T |
14726446 |
tgttgaaactcctttacatactgctgcatctatgggtcatctccggtttgccact |
14726500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 67 - 206
Target Start/End: Original strand, 26088210 - 26088349
Alignment:
| Q |
67 |
accgattgaaagctgcagctgaagcaggtgatatagatctcctctacacagtaattcaagatgatccatacattttggagcgcatagatttaataccatt |
166 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||| ||||| |||| |
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| T |
26088210 |
accgattgaaagctgcagctcaaacaggtgatatagatctcctctactcagtaattcaagatgatccatccattttggagaatatagatgtaatatcatt |
26088309 |
T |
|
| Q |
167 |
tgttgaaactcctttacatacggctgcatctatgggtcat |
206 |
Q |
| |
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|||||||||||||||||||| ||||||||| |||||||| |
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| T |
26088310 |
tgttgaaactcctttacatattgctgcatctttgggtcat |
26088349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 28859826 - 28859959
Alignment:
| Q |
29 |
agcttcaaacatgaacacaaatggcatatattgttttaaccgattgaaagctgcagctgaagcaggtgatatagatctcctctacacagtaattcaagat |
128 |
Q |
| |
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||||||||||||||||||||||| ||||| | |||||||||||||||| | ||||||| | ||||||||| |||||||||| |||||||||||| ||||| |
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| T |
28859826 |
agcttcaaacatgaacacaaatgccatatttggttttaaccgattgaatgatgcagctcatgcaggtgatgtagatctcctatacacagtaatttaagat |
28859925 |
T |
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| Q |
129 |
gatccatacattttggagcgcatagatttaatac |
162 |
Q |
| |
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||||||||| || ||||||| ||||||||||||| |
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| T |
28859926 |
gatccatacgttatggagcgtatagatttaatac |
28859959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 71 - 226
Target Start/End: Complemental strand, 31040934 - 31040779
Alignment:
| Q |
71 |
attgaaagctgcagctgaagcaggtgatatagatctcctctacacagtaattcaagatgatccatacattttggagcgcatagatttaataccatttgtt |
170 |
Q |
| |
|
|||||| | ||||||| ||| |||||||||| | || ||||| ||| ||||| | || |||||||| ||||||| ||||||||||| ||||||||| |
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| T |
31040934 |
attgaaggttgcagctcaagaaggtgatataaaccttctctatacactaattgaggaggatccatatgttttggaatatatagatttaattccatttgtt |
31040835 |
T |
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| Q |
171 |
gaaactcctttacatacggctgcatctatgggtcatcttcaatttgccactcaaat |
226 |
Q |
| |
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||||||||| | |||| |||||||||||||| ||| |||||||||||||| |||| |
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| T |
31040834 |
gaaactcctctgcatatagctgcatctatgggacatgttcaatttgccactgaaat |
31040779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 30647871 - 30647902
Alignment:
| Q |
15 |
tactgaaaaattaaagcttcaaacatgaacac |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
30647871 |
tactgaaaaattaaagcttcaaacatgaacac |
30647902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 67 - 218
Target Start/End: Original strand, 4818854 - 4819005
Alignment:
| Q |
67 |
accgattgaaagctgcagctgaagcaggtgatatagatctcctctacacagtaattcaagatgatccatacattttggagcgcatagatttaataccatt |
166 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
4818854 |
accgattgaatggtgcagctgaagcaggtgatatagatctcctttatacagtaattcaagatgatccattcattttggagatgatagatttaataccatt |
4818953 |
T |
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| Q |
167 |
tgttgaaactcctttacatacggctgcatctatgggtcatcttcaatttgcc |
218 |
Q |
| |
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||||||||||||||| |||| |||||||||||||||||||| ||||||||| |
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| T |
4818954 |
tgttgaaactcctttgcatattgctgcatctatgggtcatctccaatttgcc |
4819005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 75 - 226
Target Start/End: Complemental strand, 6612520 - 6612369
Alignment:
| Q |
75 |
aaagctgcagctgaagcaggtgatatagatctcctctacacagtaattcaagatgatccatacattttggagcgcatagatttaataccatttgttgaaa |
174 |
Q |
| |
|
|||||||||||| ||||||| | ||||||||||||||| |||||||| | |||||||||| ||| |||||| ||||||| |||||||||||||||| |
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| T |
6612520 |
aaagctgcagctcaagcaggcaacatagatctcctctacgcagtaattgatgatgatccattcatcctggagcatatagattcgataccatttgttgaaa |
6612421 |
T |
|
| Q |
175 |
ctcctttacatacggctgcatctatgggtcatcttcaatttgccactcaaat |
226 |
Q |
| |
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|||||||||||| ||||| |||||||||||| |||||||| ||| |||| |
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|
| T |
6612420 |
ctcctttacatatatctgcagatatgggtcatctccaatttgctactgaaat |
6612369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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