View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9083_low_74 (Length: 219)
Name: NF9083_low_74
Description: NF9083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9083_low_74 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 7564975 - 7565174
Alignment:
| Q |
1 |
atgacccaatgaatggcgccacttacaaatttcccaacacgtccttcaggtacacccttgttttcagaagggaagtctgtaatccttctccaaacattgc |
100 |
Q |
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| T |
7564975 |
atgacccaatgaatggcgccacttacaaatttcccaacacgtccttcaggtacacccttgttttcagaagggaagtctggaatccttctccaaacattg- |
7565073 |
T |
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| Q |
101 |
tactacctaaagtatgaaccttaacttgagttttgcaaaatttataggagttataatattgatagcatgcaaccacaattactttgtaattatcggtgaa |
200 |
Q |
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| T |
7565074 |
--ctacctaaagtatgaaccttaacttgagttttgcaaaatttataggagttataatgttgatagcatgcaaccacaattactttgtaattatcggtgaa |
7565171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 1471212 - 1471281
Alignment:
| Q |
66 |
agaagggaagtctgtaatccttctccaaacattgctactacctaaagtatgaaccttaacttgagttttgcaa |
138 |
Q |
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| T |
1471212 |
agaagggaagtcttgaatcgttctccaaaaattgttac---ctaaagtatgaaccttaactagagttttgcaa |
1471281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 135
Target Start/End: Complemental strand, 176127 - 176000
Alignment:
| Q |
5 |
cccaatgaatggcgccacttacaaatttcccaacacgtccttcaggtacacccttgttttcagaagggaagtctgtaatccttctccaaacattgctact |
104 |
Q |
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| T |
176127 |
cccaatgaacgctgccacttacaaatttgccaacattcccttcgggtatacccatgagttgcgaagggaagtctggaatccttctccaagagttg---gt |
176031 |
T |
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| Q |
105 |
acctaaagtatgaaccttaacttgagttttg |
135 |
Q |
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| T |
176030 |
gcctaaagtgtgaaccttaacttgagttttg |
176000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 1442387 - 1442458
Alignment:
| Q |
62 |
tttcagaagggaagtctgtaatccttctccaaacattgctactacctaaagtatgaaccttaacttgagttttgc |
136 |
Q |
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| T |
1442387 |
tttcagaagggaagtctgggatccttttccaaaaatt---agtacctaaagtatgaaccctaacttcagttttgc |
1442458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 55419605 - 55419475
Alignment:
| Q |
5 |
cccaatgaatggcgccacttacaaatttcccaacacgtccttcaggtacacccttgttttcagaagggaagtctgtaatccttctccaaacattgctact |
104 |
Q |
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| T |
55419605 |
cccaattaatggtgccacttacaaatttccccggacactcttcgggcaaacccgtgatttcagaagggaagtctggtatccttttccaaaagttg---gt |
55419509 |
T |
|
| Q |
105 |
acctaaagtatgaaccttaacttgagttttgcaa |
138 |
Q |
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||||||||||||| || ||||||||||||||||| |
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| T |
55419508 |
acctaaagtatgagccctaacttgagttttgcaa |
55419475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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