View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9083_low_79 (Length: 202)

Name: NF9083_low_79
Description: NF9083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9083_low_79
NF9083_low_79
[»] chr3 (2 HSPs)
chr3 (42-192)||(32802547-32802699)
chr3 (42-90)||(34591080-34591128)
[»] chr4 (3 HSPs)
chr4 (42-114)||(32692919-32692991)
chr4 (49-114)||(32055307-32055372)
chr4 (50-119)||(47560700-47560769)
[»] chr6 (3 HSPs)
chr6 (49-119)||(30509390-30509460)
chr6 (51-117)||(12605952-12606018)
chr6 (42-114)||(4806470-4806542)
[»] chr8 (4 HSPs)
chr8 (42-82)||(43631468-43631508)
chr8 (78-120)||(39093188-39093230)
chr8 (49-114)||(11995184-11995249)
chr8 (77-110)||(35210031-35210064)
[»] chr2 (5 HSPs)
chr2 (42-113)||(35022674-35022744)
chr2 (52-113)||(28627429-28627490)
chr2 (42-113)||(2517212-2517283)
chr2 (42-114)||(3882683-3882755)
chr2 (50-114)||(24792065-24792129)
[»] chr7 (1 HSPs)
chr7 (42-91)||(1360603-1360652)
[»] chr1 (1 HSPs)
chr1 (49-114)||(36321592-36321657)
[»] chr5 (1 HSPs)
chr5 (49-113)||(39426627-39426691)


Alignment Details
Target: chr3 (Bit Score: 134; Significance: 6e-70; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 42 - 192
Target Start/End: Complemental strand, 32802699 - 32802547
Alignment:
Q  42 ttacacatatttttataaa--tacataccatttatggtccttaaagagtgtcctgagggcactcattaacatttctctttatttatttattgacagaatg 139  Q
    |||||||||||||||||||  |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32802699 ttacacatatttttataaaaatacataccatttatggtccttaaagaatgtcctgaggacactcattaacatttctctttatttatttattgacagaatg 32802600  T
Q  140 ctgtggagagaccaccatcattcttaggaggttgggtaggattatactcagtg 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32802599 ctgtggagagaccaccatcattcttaggaggttgggtaggattatactcagtg 32802547  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 34591128 - 34591080
Alignment:
Q  42 ttacacatatttttataaatacataccatttatggtccttaaagagtgt 90  Q
    ||||||||||||| ||||| || ||| ||| ||||||||||||||||||    
T  34591128 ttacacatattttcataaaaacttactattaatggtccttaaagagtgt 34591080  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 32692991 - 32692919
Alignment:
Q  42 ttacacatatttttataaatacataccatttatggtccttaaagagtgtcctgagggcactcattaacatttc 114  Q
    ||||||||||||| ||||| || ||| ||| |||||||||||||||||||| |  ||||||| ||||||||||    
T  32692991 ttacacatattttcataaaaacttactattaatggtccttaaagagtgtcccggaggcactcgttaacatttc 32692919  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 32055372 - 32055307
Alignment:
Q  49 tatttttataaatacataccatttatggtccttaaagagtgtcctgagggcactcattaacatttc 114  Q
    ||||||||||||||| | | |||||| |||||||||||||| | || |||||||| ||||||||||    
T  32055372 tatttttataaatacttgctatttatagtccttaaagagtgacatgggggcactcgttaacatttc 32055307  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 47560700 - 47560769
Alignment:
Q  50 atttttataaatacataccatttatggtccttaaagagtgtc-ctgagggcactcattaacatttctcttt 119  Q
    ||||| || ||||| ||| ||||||||||||||||||||||| | || ||||||| |||||||||||||||    
T  47560700 attttcattaatacttactatttatggtccttaaagagtgtctcaga-ggcactcgttaacatttctcttt 47560769  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 30509390 - 30509460
Alignment:
Q  49 tatttttataaatacataccatttatggtccttaaagagtgtcctgagggcactcattaacatttctcttt 119  Q
    ||||||||||||||| | | |||||| ||||||||||| || || || |||||||||||||||||| ||||    
T  30509390 tatttttataaatacttgctatttatagtccttaaagattgccccgaaggcactcattaacatttcccttt 30509460  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 12606018 - 12605952
Alignment:
Q  51 tttttataaatacataccatttatggtccttaaagagtgtcctgagggcactcattaacatttctct 117  Q
    |||| |||||||| ||| ||||||| |||| |||||||||||||||  ||||| |||| ||||||||    
T  12606018 ttttcataaatacttactatttatgctcctaaaagagtgtcctgagaacactcgttaatatttctct 12605952  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 4806542 - 4806470
Alignment:
Q  42 ttacacatatttttataaatacataccatttatggtccttaaagagtgtcctgagggcactcattaacatttc 114  Q
    ||||||||||||| ||||| || ||| ||| ||||| |||||||||||||| |  || |||| ||||||||||    
T  4806542 ttacacatattttcataaaaacttactattaatggttcttaaagagtgtcccggaggaactcgttaacatttc 4806470  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 43631508 - 43631468
Alignment:
Q  42 ttacacatatttttataaatacataccatttatggtcctta 82  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  43631508 ttacacatatttttataaatacatactacttatggtcctta 43631468  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 39093188 - 39093230
Alignment:
Q  78 ccttaaagagtgtcctgagggcactcattaacatttctcttta 120  Q
    ||||||||||||||| || |||||| |||||||||||||||||    
T  39093188 ccttaaagagtgtcccgatggcactgattaacatttctcttta 39093230  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 11995184 - 11995249
Alignment:
Q  49 tatttttataaatacataccatttatggtccttaaagagtgtcctgagggcactcattaacatttc 114  Q
    ||||||||||||||| | | |||||| | |||||||||||| || | |||||||| ||||||||||    
T  11995184 tatttttataaatacttgctatttataggccttaaagagtgccccgggggcactcgttaacatttc 11995249  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 35210031 - 35210064
Alignment:
Q  77 tccttaaagagtgtcctgagggcactcattaaca 110  Q
    ||||||||||||||| ||||||||||||||||||    
T  35210031 tccttaaagagtgtcttgagggcactcattaaca 35210064  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 35022674 - 35022744
Alignment:
Q  42 ttacacatatttttataaatacataccatttatggtccttaaagagtgtcctgagggcactcattaacattt 113  Q
    ||||||||||||| ||||| || ||| ||| ||||||||||||||||| |||| || ||||| |||||||||    
T  35022674 ttacacatattttaataaaaacttacaattaatggtccttaaagagtgccctg-ggacactcgttaacattt 35022744  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 28627429 - 28627490
Alignment:
Q  52 ttttataaatacataccatttatggtccttaaagagtgtcctgagggcactcattaacattt 113  Q
    |||||||||||||||| ||||||| |||||||| || | || || | |||||||||||||||    
T  28627429 ttttataaatacatactatttatgatccttaaacagcgccccgaagacactcattaacattt 28627490  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 2517283 - 2517212
Alignment:
Q  42 ttacacatatttttataaatacataccatttatggtccttaaagagtgtcctgag-ggcactcattaacattt 113  Q
    |||||| |||||| |||||||| ||| ||||||| ||||||||||||| ||| || |||| ||||||||||||    
T  2517283 ttacacgtattttcataaatacttactatttatgatccttaaagagtg-ccttagaggcaatcattaacattt 2517212  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 3882683 - 3882755
Alignment:
Q  42 ttacacatatttttataaatacataccatttatggtccttaaagagtgtcctgagggcactcattaacatttc 114  Q
    ||||||| ||||| || | ||| ||| | ||||||| |||||||||||||| | |||||||| ||||||||||    
T  3882683 ttacacacattttcatgagtacttactacttatggttcttaaagagtgtcccgggggcactcgttaacatttc 3882755  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 24792065 - 24792129
Alignment:
Q  50 atttttataaatacataccatttatggtccttaaagagtgtcctgagggcactcattaacatttc 114  Q
    ||||||||||| || ||| ||| ||||| ||||||||||| |||  |||||||| ||||||||||    
T  24792065 atttttataaaaacttactattaatggttcttaaagagtgccctaggggcactcgttaacatttc 24792129  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 1360603 - 1360652
Alignment:
Q  42 ttacacatatttttataaatacataccatttatggtccttaaagagtgtc 91  Q
    |||||||  ||||||||||||||||| | |||| ||||||||||||||||    
T  1360603 ttacacacttttttataaatacatactacttatagtccttaaagagtgtc 1360652  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 36321657 - 36321592
Alignment:
Q  49 tatttttataaatacataccatttatggtccttaaagagtgtcctgagggcactcattaacatttc 114  Q
    ||||||||||||||| | | |||||| |||||||||||||| ||  ||| ||||| ||||||||||    
T  36321657 tatttttataaatacttgctatttatagtccttaaagagtgccccaaggacactcgttaacatttc 36321592  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 39426627 - 39426691
Alignment:
Q  49 tatttttataaatacataccatttatggtccttaaagagtgtcctgagggcactcattaacattt 113  Q
    ||||||||||||||| || || ||||| ||| |||||||||||| ||  |||||| |||||||||    
T  39426627 tatttttataaatacttatcacttatgatccataaagagtgtcccgatagcactcgttaacattt 39426691  T

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